Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00110 681 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT1G02000 664 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT2G45310 645 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT4G12250 579 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT3G23820 560 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G30440 553 / 0 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT4G23920 97 / 3e-22 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G30620 94 / 8e-21 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT3G14790 94 / 3e-20 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G12780 91 / 5e-20 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015876 [exp] 758 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 720 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 717 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10008893 [exp] 555 / 0 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015496 [exp] 552 / 0 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10032391 [exp] 551 / 0 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10022552 [exp] 550 / 0 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10016640 [exp] 550 / 0 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10031127 [exp] 530 / 0 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068400 [exp] 671 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G146500 [exp] 667 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.017G059100 [exp] 577 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.001G320000 [exp] 577 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 558 / 0 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.012G128200 [exp] 555 / 0 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.006G178500 [exp] 543 / 0 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.018G100400 [exp] 542 / 0 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G116750 [exp] 198 / 2e-62 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.011G156100 [exp] 102 / 1e-23 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10009288 pacid=23141868 polypeptide=Lus10009288 locus=Lus10009288.g ID=Lus10009288.BGIv1.0 annot-version=v1.0 ATGATTAACCATCGATATGTTGAGGTGGCACTCTTCTTTGACCAAGCTTACTTTCTGGTCCTTCCTTTTCATCGGCATCATCTTCATCTTCTTCTACCGA TCCACCACCACCGCCCCCCCCTCCAATACACTACCGCCTCCTCCTCCAATTCATTCCACTCCGATCCATCCCGCCGCTCCCTCCGTACATCCTCATGGGG CGGACCCGCCTGGGAGAAAAAAGTCCGCACCTCTGCCCGGATCCGTTCCCGCAACGGCTTCTCCGTCCTCGTCACCGGCGCTGCTGGATTCGTCGGCACG CACGTCTCCGCCTCGTTAAAACGCCGCGGGGATGGAGTTCTGGGTCTGGACAATTTCAATGATTACTACGATCCTTCTCTCAAGCGCGCCAGACAAACTC TTCTCGAACGATCGGGGGTGTTCATCGTGGAAGGTGATATAAACGACGCCGCATTGCTCAGGAAGCTTTTCGAGGTTGTCCCCTTTACTCATGTAATGCA TTTGGCCGCTCAAGCTGGTGTTAGGTACGCTATGCAAAACCCTAGCTCTTACGTTCACAGCAACATTGCCGGATTTGTTAGCTTGTTAGAGGTTTGCAAA GAGGCCAATCCGCAGCCTGCAATTGTTTGGGCGTCTTCTAGCTCTGTCTATGGTCTCAATACCAAAGTTCCCTTTTCTGAGAAGGACAGGACTGATCAAC CTGCTAGCTTGTATGCCGCTACTAAAAAGGCTGGGGAGGAAATTGCTCATACCTATAATCATATCTATGGCCTTTCCCTTACCGGGTTGAGGTTTTTCAC TGTGTATGGGCCGTGGGGGAGGCCAGACATGGCTTATTTCTTCTTTACCAAGGATATCTTGAGTGGGAAGAGTATACCTATCTTTGAAGGTGAAAATCAT GGAACTGTTGCTAGAGATTTTACTTACATTGATGATATTGTGAAAGGGTGCTTGGGTGCCTTGGATACTGCACGTAAAAGTACAGGTAGTGGAGGGAAGA AGAAAGGGCCTGCTCAGTTGAGAATTTTTAACTTGGGGAACACTTCACCTGTTCCTGTTACGAATCTAGTTTCAATTCTGGAGAGGCTTTTGAAGGTTAA GGCCAAGAAGAATGTTATGAGGTTGCCGAGGAATGGGGATGTACAGTTTACACATGCTAATATTAGTTTGGCTCACAGGGAGCTTGGATATAATCCCACC ACGGATCTGCAAACAGGGTTGAAGAAATTCGTTCGGTGGTACCTCAGTTACTATTCTGCTTCTGCAGGAAAGAAAGCTGATGCAAGATGA
AA sequence Show only first row Show all	>Lus10009288 pacid=23141868 polypeptide=Lus10009288 locus=Lus10009288.g ID=Lus10009288.BGIv1.0 annot-version=v1.0 MINHRYVEVALFFDQAYFLVLPFHRHHLHLLLPIHHHRPPLQYTTASSSNSFHSDPSRRSLRTSSWGGPAWEKKVRTSARIRSRNGFSVLVTGAAGFVGT HVSASLKRRGDGVLGLDNFNDYYDPSLKRARQTLLERSGVFIVEGDINDAALLRKLFEVVPFTHVMHLAAQAGVRYAMQNPSSYVHSNIAGFVSLLEVCK EANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILSGKSIPIFEGENH GTVARDFTYIDDIVKGCLGALDTARKSTGSGGKKKGPAQLRIFNLGNTSPVPVTNLVSILERLLKVKAKKNVMRLPRNGDVQFTHANISLAHRELGYNPT TDLQTGLKKFVRWYLSYYSASAGKKADAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10009288 [exp]	0	1
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	5.7	0.7499
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10023476 [exp]	7.3	0.7511
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10025466 [exp]	7.6	0.7829
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10028374 [exp]	13.8	0.7872
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033962 [exp]	15.2	0.7401
AT1G75140			unknown protein		Lus10010815 [exp]	19.0	0.7494
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10029289 [exp]	19.9	0.6795
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10006954 [exp]	23.9	0.7485
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	24.0	0.7278
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10032193 [exp]	35.7	0.7201

Compare expression of checked genes

Lus10009288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.