Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45330 334 / 1e-116 TRPT, EMB1067 2' tRNA phosphotransferase, embryo defective 1067, RNA 2'-phosphotransferase, Tpt1 / KptA family (.1.2) AT5G23600 327 / 7e-115 RNA 2'-phosphotransferase, Tpt1 / KptA family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015875 [exp] 122 / 5e-36 AT2G45330 99 / 3e-27 2' tRNA phosphotransferase, embryo defective 1067, RNA 2'-phosphotransferase, Tpt1 / KptA family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G094500 [exp] 351 / 4e-123 AT2G45330 312 / 6e-107 2' tRNA phosphotransferase, embryo defective 1067, RNA 2'-phosphotransferase, Tpt1 / KptA family (.1.2) Potri.002G117000 [exp] 333 / 2e-116 AT2G45330 310 / 3e-106 2' tRNA phosphotransferase, embryo defective 1067, RNA 2'-phosphotransferase, Tpt1 / KptA family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0084 [flax] [poplar] ADP-ribosyl PF01885 [flax] [poplar] PTS_2-RNA RNA 2'-phosphotransferase, Tpt1 / KptA family
Representative CDS sequence Show only first row Show all	>Lus10009289 pacid=23141849 polypeptide=Lus10009289 locus=Lus10009289.g ID=Lus10009289.BGIv1.0 annot-version=v1.0 ATGAGAAACGATAAGGAAAGATCCAGAGGCCGCGGTGGCGGTGGTTCCGGGAAGGACAAAATTGATGCTCTTGGTAGACTCTTGACGAGGATTTTACGCC ATATGGCTTCTGAGTTGAGTTTGAATATGCGGAATGATGGGTACGTCAATGTGAAGGACTTACTGCAGTTGAACATGAAAACTTTTGCCAACATTCCACT GAGATCACACACGATTGATGATATCAAAGAGGCAGTCAGCAAAGATAACAAGCAGCGATTCGGTCTCCTGGAGGAAAATGGAGAGCTCTTGATTCGTGCA AACCAAGGGCACACAGTCAAGGTAGTGGAATCAGAAAGTTTGTTACGACCCATCCTTTCAGCGGATGAAGTGCCAGCAGTGTGTGTGCATGGAACGTATA GGAAGAATCTGGATTCTATTTTACAATCTGGTTTGAAGCGCATGGAAAGGTTGCATGTCCACTTCTCCTGCGGCTTGCCAACGGATGGTGAAGTGATTAG CGGGATGAGAAAGAACATAAATGTCGTCATTTTCCTGGATGTGAAAAAGGCACTTGAAGATGGAATTAAGCTGTACGTATCGGAGAATAAGGTGATATTG ACAGAAGGTTTTGATGGTGTTGTGCCGGTGAAGTACTTTGAGAAAGTTGAATCTTGGCCTACTCGAAGACCTGTCCCATTACAAAGCTAA
AA sequence Show only first row Show all	>Lus10009289 pacid=23141849 polypeptide=Lus10009289 locus=Lus10009289.g ID=Lus10009289.BGIv1.0 annot-version=v1.0 MRNDKERSRGRGGGGSGKDKIDALGRLLTRILRHMASELSLNMRNDGYVNVKDLLQLNMKTFANIPLRSHTIDDIKEAVSKDNKQRFGLLEENGELLIRA NQGHTVKVVESESLLRPILSADEVPAVCVHGTYRKNLDSILQSGLKRMERLHVHFSCGLPTDGEVISGMRKNINVVIFLDVKKALEDGIKLYVSENKVIL TEGFDGVVPVKYFEKVESWPTRRPVPLQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Lus10009289 [exp]	0	1
AT5G12240			unknown protein		Lus10026824 [exp]	5.2	0.8491
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10040806 [exp]	5.7	0.8471
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10021294 [exp]	9.6	0.7910
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10012258 [exp]	12.8	0.8273
AT5G27830			unknown protein		Lus10020660 [exp]	14.7	0.8448
AT5G10650			RING/U-box superfamily protein...		Lus10042443 [exp]	17.9	0.8004
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	19.6	0.8457
AT2G27830			unknown protein		Lus10000385 [exp]	21.2	0.7816
AT3G19553			Amino acid permease family pro...		Lus10009849 [exp]	23.1	0.7769
AT5G14100		ABCI11, ATNAP14	ARABIDOPSIS THALIANANON-INTRIN...		Lus10032025 [exp]	23.8	0.8197

Compare expression of checked genes

Lus10009289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.