Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45350 569 / 0 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 314 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 313 / 3e-98 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 296 / 2e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 290 / 4e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 291 / 1e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G22760 287 / 4e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 289 / 9e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 290 / 1e-89 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 283 / 2e-87 SLO1 SLOW GROWTH 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015874 [exp] 868 / 0 AT2G45350 687 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 335 / 8e-107 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 331 / 4e-105 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028907 [exp] 306 / 4e-97 AT4G22760 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 290 / 6e-91 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10017243 [exp] 285 / 4e-90 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 292 / 5e-90 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 289 / 3e-89 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 284 / 1e-88 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068800 [exp] 626 / 0 AT2G45350 735 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 351 / 5e-113 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G088600 [exp] 311 / 2e-98 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G048800 [exp] 310 / 5e-97 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 306 / 2e-96 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.003G116100 [exp] 299 / 7e-95 AT4G22760 669 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G072500 [exp] 298 / 1e-94 AT3G21470 565 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G265200 [exp] 296 / 2e-94 AT3G29230 364 / 9e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 300 / 2e-93 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G140400 [exp] 295 / 2e-93 AT3G29230 398 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009290 pacid=23141853 polypeptide=Lus10009290 locus=Lus10009290.g ID=Lus10009290.BGIv1.0 annot-version=v1.0 ATGCTCAAGAATGGAGTTTCATTTGATAATTTCTCTCTGTCTTTGGTCGTGAAAGCTTACTCTCGGGTTGGTTGCATCGACGGAGGATTGCAGGTTCATG GTCTGTTGAGTAAATCGGCTTTTGGCTCCTATTTGTTTCTGCAGAATTGTTTGGTTCCTCTGTATGTTAGGTGTCGGTGTCCTGATGTTGCTCGCCGGGT GTTCGATAAAATGTCTACAAAGGACGCCGTTTCTTATAATTCCATGATTGATGGGTACGCCACGTCCGGGAAGATTGAGCTGGCGCGGCAGTTGTTCGAT TCTATGCCGGTTCAGGACAGAAATTTAACGTCTTGGAATTCGTTGATCAGCGGGTACGCCAAATCAGAAGATGGACTTGGGGGTGCATGGGAACTGTTTG GGAAAATGCCACAAAGGGATCTATTTTCGTGGAACTCGATGATCGATTGCTGTGTGAAGTTTGGGAAAATAGAGGATGCTCAGATACTGTTTGACAGAAT GCCGAGAAAGGATAAGGTCAGCTGGGCTAGCATGATCTGTGGGTATGCAAAACTAGGCAAGATGAACATGGCGAGAAGCTTGTTTGATGAAATGCCAGAG AGGGATATTGTTGTGTGGAATGCCATGATGAGCGGCTATGTACAGAATGGATATTTCTTGGAAGCCTTGGATATGTTTCAGAGCATAATCCAAAGAAGTG TAAATCTCTTGTTATTTCCGGACGAGGCTACATTGTCGATCGCTCTTTCTGCGACTGCTCAGCTAGGAGAAATCGAGAGAGGAGTAGGGATGCATCGGTA TATTGAAGCCAGCAGGTTTTCGACAAAGGGGAAACTCGGGGTTTCCCTCATCGACATGTACTCTAAATGCGGTAGTATAAACAATGCCATGTTGATCTTT GAAGATATCAAGGACAAAAGTGTTGATCATTGGAATGCTATGATTTGTGGGTTGGCTGTACATGGCTATGGAGAAATGGCAATCGATCTGCTGATGAAGA TAGTGAGAACGTCTGTGAAACCGGATGACATTACATTTATCGTTTTGTTAAGCGCTTGTTGCCACGCCGGGTTGGTTAAAGAAGGTATGATATGTTTCGA GCTTCTGAGACGAGTTTACAAAATCGAGCCCAAGCTGCAACACTATGGCTGTATGGTGGATATCCTTTGCAGAGCGGGGCATAGAGAGGAAGCGATACGA TTCGTGGACAAAATGCCGAGGGAACCAAATGACATCATTTGGAGGACGTTGCTTGCTGCTTGTAGATATCGCGAAAGTTTAAACGTCGGAGAACGATTAG CTACGCGTCTGGTGAGCATAGATTCTTCAAAGTCGAGTTCTTATGTGCTGCTGTCGAACATATATGCGAGTCTTGGAATGTGGGATGGAGTGAATAGAGT GAGGGCGAGAATGATGAGGCGAAAGTTGAGGAAGATTCCTGGTTGCAGTAGCATTGAACTTGAAGGGACTGTTGAGGAGATGATATTTGAGTTTAGATAT TTTGTACAAATTGTGATTGAGAGGGAACATCTATCCCCTGCCTGTTCTGTGTAA
AA sequence Show only first row Show all	>Lus10009290 pacid=23141853 polypeptide=Lus10009290 locus=Lus10009290.g ID=Lus10009290.BGIv1.0 annot-version=v1.0 MLKNGVSFDNFSLSLVVKAYSRVGCIDGGLQVHGLLSKSAFGSYLFLQNCLVPLYVRCRCPDVARRVFDKMSTKDAVSYNSMIDGYATSGKIELARQLFD SMPVQDRNLTSWNSLISGYAKSEDGLGGAWELFGKMPQRDLFSWNSMIDCCVKFGKIEDAQILFDRMPRKDKVSWASMICGYAKLGKMNMARSLFDEMPE RDIVVWNAMMSGYVQNGYFLEALDMFQSIIQRSVNLLLFPDEATLSIALSATAQLGEIERGVGMHRYIEASRFSTKGKLGVSLIDMYSKCGSINNAMLIF EDIKDKSVDHWNAMICGLAVHGYGEMAIDLLMKIVRTSVKPDDITFIVLLSACCHAGLVKEGMICFELLRRVYKIEPKLQHYGCMVDILCRAGHREEAIR FVDKMPREPNDIIWRTLLAACRYRESLNVGERLATRLVSIDSSKSSSYVLLSNIYASLGMWDGVNRVRARMMRRKLRKIPGCSSIELEGTVEEMIFEFRY FVQIVIEREHLSPACSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Lus10009290 [exp]	0	1
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10010066 [exp]	3.3	0.8178
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10014144 [exp]	13.0	0.8055
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012000 [exp]	14.1	0.6957
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10005294 [exp]	18.8	0.7996
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10027213 [exp]	24.7	0.7568
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10038925 [exp]	26.8	0.7587
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10023967 [exp]	28.3	0.7458
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10042759 [exp]	28.7	0.7939
AT5G56450		PM-ANT	Mitochondrial substrate carrie...		Lus10013518 [exp]	43.3	0.6714
AT5G66530			Galactose mutarotase-like supe...		Lus10028310 [exp]	44.6	0.7490

Compare expression of checked genes

Lus10009290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.