Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60800 167 / 1e-51 DHHC-type zinc finger family protein (.1) AT4G22750 111 / 6e-30 DHHC-type zinc finger family protein (.1.2) AT4G22753 97 / 1e-23 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G00840 71 / 6e-15 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024561 [exp] 122 / 6e-34 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 120 / 4e-33 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10030211 [exp] 91 / 3e-23 AT4G00840 159 / 5e-49 DHHC-type zinc finger family protein (.1) Lus10002694 [exp] 89 / 7e-21 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10015872 [exp] 0 / 1 AT4G22750 241 / 4e-88 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G069200 [exp] 181 / 7e-57 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 172 / 4e-53 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 155 / 2e-46 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.001G117100 [exp] 149 / 2e-44 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.014G104000 [exp] 84 / 1e-19 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009291 pacid=23141865 polypeptide=Lus10009291 locus=Lus10009291.g ID=Lus10009291.BGIv1.0 annot-version=v1.0 ATGCCGACTATGCACAGATCTGGAGCTACCATGGCGTGGAATGTCTTCAAATTCTGCACTGCTCTGCGGGGTCTGGGATCCATCATGATCTTGTTGGTTC TAGGGGTTGTCGGTGTCACTTACTACGCCGTCGTTTTGACCAATTACGGACCGACTTTGTACGATGGTGGCCTCGACTCCCTTATAGCTCTCCTCGTCTT GATCCCCTTCCATTGTTTGTTGATGATGCTATTATGGAGTTACTTCTCTGTTGTGTTAACTGATCCTGGTAGCGTCCCTCCAAATTGGAGGCCTTCTGCT GATGAGGAAAGGGGGGAAGCTGATCCATTGAACGGTCAAGACTTCAGTGGTTCGCAGACTGACCTGGCTAAGCCAGGAGCATACGAGAAGAAAACCACCC CAAAGTGGCGCTATGATCTGGGACGGAGGAGGAACTTTGAACAGGTGCTTGGCACAGATAAATGGTACTGGTTTGTTCCGGCATACTCAGACGAGGATTT GCGACGAATGCCTGCACTCCAAGGCCTCGAATATCCATCAAAGCCTGATTTTGATGCTGAAGAGTTCTAG
AA sequence Show only first row Show all	>Lus10009291 pacid=23141865 polypeptide=Lus10009291 locus=Lus10009291.g ID=Lus10009291.BGIv1.0 annot-version=v1.0 MPTMHRSGATMAWNVFKFCTALRGLGSIMILLVLGVVGVTYYAVVLTNYGPTLYDGGLDSLIALLVLIPFHCLLMMLLWSYFSVVLTDPGSVPPNWRPSA DEERGEADPLNGQDFSGSQTDLAKPGAYEKKTTPKWRYDLGRRRNFEQVLGTDKWYWFVPAYSDEDLRRMPALQGLEYPSKPDFDAEEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60800			DHHC-type zinc finger family p...		Lus10009291 [exp]	0	1
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10037313 [exp]	1.7	0.8078
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	8.8	0.7550
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	9.3	0.7727
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	11.0	0.7824
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	17.6	0.7608
AT3G22750			Protein kinase superfamily pro...		Lus10042622 [exp]	22.9	0.7550
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10035284 [exp]	26.2	0.7499
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Lus10024240 [exp]	29.0	0.7427
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	29.4	0.7540
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	32.0	0.7644

Compare expression of checked genes

Lus10009291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.