Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03250 649 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 574 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G13600 561 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G44820 422 / 4e-140 Phototropic-responsive NPH3 family protein (.1) AT5G66560 395 / 2e-129 Phototropic-responsive NPH3 family protein (.1) AT3G50840 360 / 6e-117 Phototropic-responsive NPH3 family protein (.1) AT5G64330 359 / 1e-114 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT1G03010 335 / 1e-106 Phototropic-responsive NPH3 family protein (.1) AT5G48800 334 / 2e-106 Phototropic-responsive NPH3 family protein (.1) AT5G67385 331 / 2e-105 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015871 [exp] 1139 / 0 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 859 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 857 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 594 / 0 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 586 / 0 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 558 / 0 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 555 / 0 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 414 / 6e-137 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 410 / 2e-135 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038600 [exp] 766 / 0 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 740 / 0 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 684 / 0 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 590 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 585 / 0 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 436 / 2e-145 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 427 / 4e-142 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 412 / 5e-136 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 412 / 7e-136 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 377 / 4e-122 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10009292 pacid=23141861 polypeptide=Lus10009292 locus=Lus10009292.g ID=Lus10009292.BGIv1.0 annot-version=v1.0 ATGGCGTGCATGAAGCTTGGATCCAAATCTGAGGTCTTCCACCGTGATGGCCATGACTGGTTTTCTTCATCTGGGTTACAAAGTGATTGCGTCGTCGAAG TTGGAGAATCATCCTTTCATCTCCACAAGTATCCACTACTCACCAGAAGCAAACTACTAGAAAGTCTCATAGCAGCACAACGTATTGAGAATGATAACAC TTCATCATGTGTCCTCCAACTCGACGATCTACCCGGCCGAACCAACAGCTTTCTCCTCGTAGCCAAATTCTGTTACGGTGCCCGAATCGAACTCGACGCA CTGAACATAGTCCGTCTCAGATGCGCCGCTGAATATCTCGGGATGACCGAAGAATATGAAGAAGGAAATCTCATCGCACAGACCGAAACATTCCTCAAAC AAGTGTTTAACCACTGGACAGACTCTCTCCAGGCTCTCGAAACTTGCGAAGAAGTCATGCCGCTAGCGGAAGAGCTCCACATTGTGTCCCGGTGCATCGA TTCCCTGGCGATGAAAGCTTGCGCCGATCCGAGTCTGTTCAGTTGGAACGGAATACTGTCGGAAACAGAACAGAAGAAAACCAGGGTTACCGATCTGGTC GACGACGATTGGTGGTACGAGGATGTTTCTTTCCTGACATTGCCACTTTACAAAAGGCTGATTCAGGCAGTAATAAAAAATGGTATAAAACCTGAAAAAG TTGCTGGAGCTTTGATGTGCTACGCAAGGAGGTTCTTACCGTTACTCGGTCGACAACCGAGCTTCCAGAATTTGAAACAGGATGCGCTCGGTTCCACCAT CAAGACTACTCCACAATCGGATCAAAGGAATCTTCTCGAAGAGATTGTGGAACTTCTGCCTGATCAAAAGGGGATTGCACCGACCAAGTTCTTGCTCAGG CTTTTGCGGACGGCGATTCTGCTTCATGCTGGGAAATCCTGTCGGGAGAATCTGGAGAAGAGGATCGGAGCGCAGTTGGATCAGGCGGTGCTCGAGGATC TTTTGATACCGAATGTGGGATATTCTAGCGAGACTTTGTATGATATTGATTGTGTTCAAAGGTTGCTTGATCATTTCATGCTTGTGGACCAAGCGAATTA TATGGTGGATGAGGGTCAAGTACTGTTGGGAGATAATACTGGATCTCAGTCGTCGTCGCTAACTCCGGTGACGTTGGTGGCGAATCTTATTGATAATTTT CTAGCGGAGGTGGCTCCTGATGTTAATTTGAAGCTGTCGAAGTTTCAGTCTGTAGCGGCGTTGATTCCTGATTATGCTAGGCCGATTGACGACGGAATCT ATCGTGCGATTGATATATACTTTAAGGCACATCCATGGCTGACAGATGCAGAAAGAGAGCTAGTCTGCAGACTGATGAACTGCCAGAAGCTATCACTAGA AGCAAGCAGTCACGCAGCGCAGAACGAGAGGCTACCGCTTCGAGTCATAGTGCAAGTTTTGTTCTTTGAGCAATTGAGGCTCCGAACCTCCTTCGCAGGG TGGTTCTACGTGTCCGACAGCATAGACAACCCGCAAAATCGAAGCGGAAATCTGGGAATGGGAAGGAACGGTGATGGAATACAAGAAGAAGAGAACGATA CGAGGGAGCGGATCGTTGAGCTTGAGAAAGAGTGCATGAACATGAAACAAGAGATTGAGAAGCTATTGATGAAGAACAATAATAAAGGGAGCTGGAATGT GTTGCTGAGGAAGTTGGGGTTTGGTAAGGGTAAAGCTGCTGCTGGGAAGCAGAGTACTGGTGATAATGACGATCAACAGAAGCTACCAAAACCAACTACA AATGGTAAAGAATCGGTCATGGAAAGTTCCACGACGCCATTGATGAAAGATGAAAATCATCATAATAAACTGGGGGGATGA
AA sequence Show only first row Show all	>Lus10009292 pacid=23141861 polypeptide=Lus10009292 locus=Lus10009292.g ID=Lus10009292.BGIv1.0 annot-version=v1.0 MACMKLGSKSEVFHRDGHDWFSSSGLQSDCVVEVGESSFHLHKYPLLTRSKLLESLIAAQRIENDNTSSCVLQLDDLPGRTNSFLLVAKFCYGARIELDA LNIVRLRCAAEYLGMTEEYEEGNLIAQTETFLKQVFNHWTDSLQALETCEEVMPLAEELHIVSRCIDSLAMKACADPSLFSWNGILSETEQKKTRVTDLV DDDWWYEDVSFLTLPLYKRLIQAVIKNGIKPEKVAGALMCYARRFLPLLGRQPSFQNLKQDALGSTIKTTPQSDQRNLLEEIVELLPDQKGIAPTKFLLR LLRTAILLHAGKSCRENLEKRIGAQLDQAVLEDLLIPNVGYSSETLYDIDCVQRLLDHFMLVDQANYMVDEGQVLLGDNTGSQSSSLTPVTLVANLIDNF LAEVAPDVNLKLSKFQSVAALIPDYARPIDDGIYRAIDIYFKAHPWLTDAERELVCRLMNCQKLSLEASSHAAQNERLPLRVIVQVLFFEQLRLRTSFAG WFYVSDSIDNPQNRSGNLGMGRNGDGIQEEENDTRERIVELEKECMNMKQEIEKLLMKNNNKGSWNVLLRKLGFGKGKAAAGKQSTGDNDDQQKLPKPTT NGKESVMESSTTPLMKDENHHNKLGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10009292 [exp]	0	1
					Lus10022528 [exp]	2.2	0.7423
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Lus10022744 [exp]	3.2	0.7423
AT5G53480			ARM repeat superfamily protein...		Lus10031905 [exp]	5.5	0.6839
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10019748 [exp]	8.5	0.6963
AT3G57990			unknown protein		Lus10000401 [exp]	8.8	0.7015
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10018132 [exp]	9.8	0.7338
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	11.2	0.6851
AT2G42000		AtMT4a	Arabidopsis thaliana metalloth...		Lus10022998 [exp]	12.2	0.7357
AT5G06740			Concanavalin A-like lectin pro...		Lus10032783 [exp]	21.9	0.6375
					Lus10027564 [exp]	23.1	0.6221

Compare expression of checked genes

Lus10009292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.