Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02010 836 / 0 SEC1A secretory 1A (.1.2) AT1G12360 733 / 0 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT4G12120 656 / 0 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT1G77140 103 / 8e-23 ATVPS45, VPS45 vacuolar protein sorting 45 (.1) AT2G17980 76 / 5e-14 ATSLY1 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015870 [exp] 1252 / 0 AT1G02010 909 / 0.0 secretory 1A (.1.2) Lus10032196 [exp] 741 / 0 AT1G12360 1031 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10024558 [exp] 718 / 0 AT1G12360 1034 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10018921 [exp] 102 / 2e-22 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1) Lus10028622 [exp] 101 / 3e-22 AT1G77140 977 / 0.0 vacuolar protein sorting 45 (.1) Lus10023936 [exp] 73 / 4e-13 AT2G17980 994 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10014435 [exp] 70 / 3e-12 AT2G17980 989 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G069300 [exp] 889 / 0 AT1G02010 945 / 0.0 secretory 1A (.1.2) Potri.003G115800 [exp] 767 / 0 AT1G12360 1083 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.001G116900 [exp] 756 / 0 AT1G12360 1113 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.002G071600 [exp] 105 / 9e-24 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1) Potri.005G188000 [exp] 102 / 1e-22 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.004G204400 [exp] 82 / 6e-16 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.009G165300 [exp] 82 / 6e-16 AT2G17980 1003 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [flax] [poplar] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Lus10009293 pacid=23141879 polypeptide=Lus10009293 locus=Lus10009293.g ID=Lus10009293.BGIv1.0 annot-version=v1.0 ATGTCCTTCTCCGATTCTGAGTCTCAAGGCGCCACTAAAGAGTACAGATTCTTTCGTGACTATAGCCGCGATCGTTTGCTGCACGAAATGTTGGGTTCGA CAAAAACAGATGACCCGAGATCAGCTTGGAAAGTACTTATCATGGACAAAGTTACAGTGAAAGTCATGTCTCATTCTTGCAAAATGTCAGATATCACAGA TCAAGGAATTTCCTTGGTGGAAGACCTTTTCAGAAGAAGGGAGCCTTTACCATCAATGGATGCAATCTACTTCATCCAACCATCTAAAGAAAACATTGTG ATGTTCTTATCAGATATGTCAGGAAGAGAGCCCTTATACAACAAAGCTTATGTGTTCTTTAGTTCGCCTGCACCAAAGGACATAATAAATCATATAAAAT CGGACGCATTTATGACGGATCAAGATGACGCACTGAGAGCACTATATAGTGTTGACGCAGATAAGAACAGTAGAAGATTTGAGGGTTCTTTGAACCTCAT GGCTACTCGCCTGGCAACTGTGTTTGCTTCCTTCAAGGAGCTTCCAAATGTTCGGTATCGATCTGCGAAGCCATCAGACGAATCGACGTTTCGAGATTCG ATCCCGGAAAAGTTGGCTACTGCAGTCTGGAAAATGGTTTCACAGTATAAGTCCATTCCAAACTTCCCACAGACTGAAACATGTGAACTCCTCATCCTGG ACAGAACTATTGATCATATTGCCCCAGTGATTCACGAGTGGACTTACGATGCAATGTGCCATGATTTGCTGGACATGGATGGCAATAAGTATGTCATCGA GGTTCCTAGTAAATCAGGCGGTCCACCCCAAGAAAAAGAAGTGCTACTAGAAGATAATGACTCTGTCTGGCTTGAGCTACGCCATGTCCATATTGCAGAT GCAAGTGAGCGTTTGTACGAAAAGATGACCACTTTTTCGCAGAAGAACAAAGCAGCACAAATGCAGCAGAATAAGGATGGAGGTGAAATATCAACAAGGG AGTTGCAGAAGATAGTTCAAGCTTTGCCCAAATACAATGAAATTATGGAGAAGCTGCAGCTTCATGTTGAGATTGCAGGGAAAATTAACTTGCAAATTAG AGATCTGGGTTTGAGAGATTTGGGGCAGCTAGAGCAGGATCTAGTGTTTGGTGATGCAGGGGCTAAAGAGGTCATTAGCTATCTCAGAACAAATAAGCAG GACGATCCTGGAAACAAGTTGCGGTTGTTGATGATCTACGCATTCGTGTACCCAGAAAAGTTCGAGGGTGACAAAGGTTTGAAGCTGATGCAGTTGGGAA AGTTGTCGGATAAGGAAATGCAAGTAGTGAGAAACATGCAGATGCTGGTTGGTTCAACAGCTCAACCCAAAAAGCCTAAAGGCAATTTCTCCCTCAAATT TGATAACGCTAAGACGAAAAATGCAGCGAGGCAGGACAAAACTGAGGAGGAGGAAGAGACATGGCAGTTGTTTCGATTTTTCCCTGTCTTAGAGGAGCTT CTGCAGAAACTGAACAAAGGAGACTTGCCAAAGAGCGACTATGGCTGCATGAATGAAGCAAGCAAATTGGCGGAGGAGAGTAGCGGCAGAGCAAAGACAA CACATCCTACTAGCCTCCCATCACCAGATAGAAAAGCTCCAGCTCAGTCTAGGAGATCCAGAAGGACTCCGAATTGGGCTCGCCAAAATCATTCCGACGA CGGATACTCCAGTGATTCAGTGTTGAAGAATGCAGTAGTACTTGATCCGAAGAAAATGGGGCAACGTATCTTTGTGTTCATAATAGGCGGGGCAACTCGG TCCGAGTTGCGAGTTTGTCATAAGCTCACAACAAAGCTAAGGAGGGAAGTGGTGTTGGGTTGTACCAGTTTGGATGATCCCCAACTTTACCTTGAGAAAT TGGAGCTCTTGACGGAACCTGAACCGGCATCAGCTGGCCATATGCCGATGATATTCTAA
AA sequence Show only first row Show all	>Lus10009293 pacid=23141879 polypeptide=Lus10009293 locus=Lus10009293.g ID=Lus10009293.BGIv1.0 annot-version=v1.0 MSFSDSESQGATKEYRFFRDYSRDRLLHEMLGSTKTDDPRSAWKVLIMDKVTVKVMSHSCKMSDITDQGISLVEDLFRRREPLPSMDAIYFIQPSKENIV MFLSDMSGREPLYNKAYVFFSSPAPKDIINHIKSDAFMTDQDDALRALYSVDADKNSRRFEGSLNLMATRLATVFASFKELPNVRYRSAKPSDESTFRDS IPEKLATAVWKMVSQYKSIPNFPQTETCELLILDRTIDHIAPVIHEWTYDAMCHDLLDMDGNKYVIEVPSKSGGPPQEKEVLLEDNDSVWLELRHVHIAD ASERLYEKMTTFSQKNKAAQMQQNKDGGEISTRELQKIVQALPKYNEIMEKLQLHVEIAGKINLQIRDLGLRDLGQLEQDLVFGDAGAKEVISYLRTNKQ DDPGNKLRLLMIYAFVYPEKFEGDKGLKLMQLGKLSDKEMQVVRNMQMLVGSTAQPKKPKGNFSLKFDNAKTKNAARQDKTEEEEETWQLFRFFPVLEEL LQKLNKGDLPKSDYGCMNEASKLAEESSGRAKTTHPTSLPSPDRKAPAQSRRSRRTPNWARQNHSDDGYSSDSVLKNAVVLDPKKMGQRIFVFIIGGATR SELRVCHKLTTKLRREVVLGCTSLDDPQLYLEKLELLTEPEPASAGHMPMIF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02010		SEC1A	secretory 1A (.1.2)		Lus10009293 [exp]	0	1
					Lus10033498 [exp]	5.1	0.7054
AT5G19360		CPK34	calcium-dependent protein kina...		Lus10036050 [exp]	7.4	0.6509
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10042755 [exp]	10.5	0.6654
AT5G01140			Protein of unknown function (D...		Lus10040317 [exp]	19.9	0.6149
					Lus10030050 [exp]	20.5	0.6405
					Lus10040835 [exp]	37.4	0.6116
AT4G39610			Protein of unknown function, D...		Lus10036630 [exp]	65.8	0.6344
AT2G29880			unknown protein		Lus10005028 [exp]	71.1	0.5418
					Lus10001565 [exp]	79.2	0.5566
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10003274 [exp]	79.2	0.5680

Compare expression of checked genes

Lus10009293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.