Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48050 835 / 0 KU80, ATKU80 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1) AT3G60820 333 / 3e-108 PBF1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT1G21720 72 / 4e-14 PBC1 proteasome beta subunit C1 (.1) AT1G77440 70 / 3e-13 PBC2 20S proteasome beta subunit C2 (.1.2) AT4G31300 51 / 1e-06 PBA1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT3G27430 44 / 0.0003 PBB1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT5G40580 44 / 0.0003 PBB2 20S proteasome beta subunit PBB2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015868 [exp] 1327 / 0 AT1G48050 826 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1) Lus10015867 [exp] 369 / 3e-122 AT3G60820 379 / 2e-135 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10000062 [exp] 219 / 7e-67 AT3G60820 232 / 6e-79 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10004024 [exp] 163 / 2e-45 AT3G60820 190 / 4e-61 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10030271 [exp] 71 / 3e-15 AT3G60820 82 / 3e-21 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10020599 [exp] 74 / 1e-14 AT1G21720 355 / 7e-127 proteasome beta subunit C1 (.1) Lus10004885 [exp] 72 / 3e-14 AT1G21720 356 / 2e-127 proteasome beta subunit C1 (.1) Lus10030272 [exp] 56 / 1e-09 AT3G60820 81 / 2e-20 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10026984 [exp] 54 / 4e-07 AT4G31300 357 / 2e-124 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G069700 [exp] 976 / 0 AT1G48050 828 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1) Potri.002G148200 [exp] 738 / 0 AT1G48050 632 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1) Potri.002G148300 [exp] 333 / 2e-108 AT3G60820 387 / 2e-138 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.014G069800 [exp] 329 / 8e-107 AT3G60820 362 / 6e-129 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.002G080800 [exp] 77 / 1e-15 AT1G21720 383 / 1e-137 proteasome beta subunit C1 (.1) Potri.005G180500 [exp] 74 / 1e-14 AT1G21720 391 / 9e-141 proteasome beta subunit C1 (.1) Potri.006G077900 [exp] 57 / 7e-09 AT4G31300 416 / 2e-149 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.018G145900 [exp] 56 / 2e-08 AT4G31300 405 / 3e-145 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.017G071100 [exp] 44 / 0.0002 AT5G40580 497 / 1e-180 20S proteasome beta subunit PBB2 (.1.2.3) Potri.004G066000 [exp] 43 / 0.0005 AT3G27430 495 / 1e-179 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0616 [flax] [poplar] SPOC PF02735 [flax] [poplar] Ku Ku70/Ku80 beta-barrel domain CL0128 [flax] [poplar] vWA-like PF03731 [flax] [poplar] Ku_N Ku70/Ku80 N-terminal alpha/beta domain CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] PF08785 [flax] [poplar] Ku_PK_bind Ku C terminal domain like CL0052 [flax] [poplar] PF03730 [flax] [poplar] Ku_C Ku70/Ku80 C-terminal arm
Representative CDS sequence Show only first row Show all	>Lus10009294 pacid=23141901 polypeptide=Lus10009294 locus=Lus10009294.g ID=Lus10009294.BGIv1.0 annot-version=v1.0 ATGGAGGGTAATAGTTCGTTCTCATTTATATTTGTAATCTGTTCTCATCTCCTTCGATGCACGAATTTGTTGATTTTGAACCGCTTTGCGTACTCTGACT GTATTATCAGCACATGTGTCGCGATTGCCGGAGCGGATTACTGTGTTATTGCTTCTGATACTCGGCTGTCCACCGGCTACAATATTCTCACCCGTGATCA CTCCAAAATCCACAAGCTAGCAGACAAATGTATATTAGCTTCTTCGGGATTTCAAGCTGATATGAAGGCTTTGCAGAAGCATTTGTCTGCTAGACACCTT ATCTATCAGCATCAACATAACAAACAAATGAGCTGTCCTGCTATGGGTCAACTACTCTCCAACACCCTCTACTACAAACGTTTCTTCCCTTACTACACCT TTAATGTTCTGGGTGGACTCGACAATGAAGGTATGGGATGTGTTTACACGTATGATGCTGTTGGTTCCTATGAGAGGGTGGGGTACAGCTCCCAGGGTTC TGGTTCTGTACTGATCATGCCTTTCCTTGACAACCAATTGAAGTCTCCAAGCCCTCTCTTACTTCCAGCACAGGATGCTGTGACTCCACTTGCTGAGTCT GAAGCAATTGATCTAGTGAAAACTTGTTTCGCTTCTGCAACTGAGAGGGACATACACACTGAAAACATGGTGTTGGTACTGGATGTTGGTCCGACTATGC ACGCTCTTCTTCCTGAGGTTGAAAGGGTCTGCTCTATGCTTATCGAGAAGAAGTTGATTTACCACAGGGCTGATGAAGTTGGAGTCGTTCTATTCGGTAC AGAAGATACTGACAATGAGCTGACGAATGAAGTGGGTGGATATGAGCATGTTGTGGTTCCACTGAACATGAGAGTTGTTGATGGCGATTTGGTGCGTGGA GTGCATCAGCTTCCCCGTGGAACTGTTCATGATCTTGATGCTATTGTTGTTGGTGTTGATCTATTGATAAAGAAGTATCGCGATACAAACAAAGGGAAGA AGCGTATCTGCCTTATAACTAATGCACAATGCCCGGTTAAAGATCCCGCTGAAGGAAGAAAAGAAGATCAAGTTAGCATGATTGCAAAACAAATGGATAC AAAGGGGATAGCCTTTGAAACTATTGTGGTAAGGGGACCACACACAGACGGCCCACATAAGAGAATAATGGATGAGAATGATCATCTGTTGAATCTATTC TCTACGAAGACATCTGCAAAGATAGTTTATGTTCACAACCCTACTTCATTATTGGGTGCATTAAGGACTCGGAATATAACTCCTGTCACGATATTCAGGG GTGATCTTGAAATAGGTTTGAAGATGAAAATTAAGGTTTGGGTGTACAAAAAGACAGCCGAGGAGAAATTTCCCACACTGAAGAAATATTCGGATAAAGC ACCACCAACTGATAAGTTTGCCACGCATGATGTTAAGGTAGATTATGAGTATCGGAGTGTTGAAGATCATGATAAGATGGTAGCACCTGAACAAAGGATT AAGGGTTATCGTTATGGACCACAAGTGGTTCCAATAGCATCAGCTGAATGGGATGCTGTGAAATTCAAACCAGAGAAGGGTGTGAAGCTTCTTGGATTTG CAGATTCTTCAGATGTGTTGAGACATTATTACATGAAAGATGTCAACATTTTCGTTGCTGAGCCTGGCAACACAAGGGCCACTCTTGCTATTTCAGCCTT AGCAAGAGCGATGAAAGAAATGAGTAAGGTCGCAATTGTTCGTTGTGTTTGGAGACAAGGACAGCAAAATGTCGTTGTCGGGGTTTTAACGCCCAATATA TCAGAGAAGGATGATACTCCTGATTCATTTTACTTCAATACACTCCCTTTCATAGAGGATGTACGCGAATTTCAGTTTCCATCATTCAGCAATTTTCCAG CTTCCTGGCAGCCAAATGATAAGCAGCAAGAAGCAGCGGATGAGCTTGTGAAGATGCTTGACCTAGCTCCATCTGGTAGAGATGAGTTTCTACTGCCTGA CCTTACACCGAATCCTATTCTTGAACGGTTTTATAGGCATTTGGAGATAAAATCAAGGGAACCTGATGCAGCTGTGCCTCCACTTGATGGAGCCCTCAAA AGGATAATCGAACCTGATCCAGAACTTTTATCTGAAAATAAACATGCCATTGACATGTTCCGTTGCAGCTTTGAAGTCAAAGCGAATCCAAAAATGAAGA AATCAACAAAGAACTTAATGGTGGATAAAGCAGCTGGCTCAGACGAGGAGGATCGTGGTTATATAGATGCTCCAAACGCTTTATCTGCAAACACACAGCA GGTCGATGAAATTGGAGACTCGACTCCTGTGCAAGATTTTGAAGCAATGATGTCTCGAAGGGACAGCCCGGACTGGATTGGCAAAGCAATCCAGAAAATG AGAAACAAAATAATGGGGTTACTGAATGGTCGTCCGCATGAAGATGTTAACAATGCCAAGGCATTGGATTGCTTAGAAGCCCTCCGTAAAGGTTGCATCA TGGAACAGGAACCAAAACAATACAACGAGTTCCTCAGACAATGTATTGAGTTATGGCAAGATAAGAAGCTAGGCGTTAACAGCGGTTTCTACAGAGAAGT GGCATCCAGAGGCCTGACTTTGATATCCAAGTCGGAAGCTCCTGACAGTGACGTTAGAGAAGATGAAGCTAGTCGATTTCTGATCAAGGAGCCAAAAGAA GAGTGA
AA sequence Show only first row Show all	>Lus10009294 pacid=23141901 polypeptide=Lus10009294 locus=Lus10009294.g ID=Lus10009294.BGIv1.0 annot-version=v1.0 MEGNSSFSFIFVICSHLLRCTNLLILNRFAYSDCIISTCVAIAGADYCVIASDTRLSTGYNILTRDHSKIHKLADKCILASSGFQADMKALQKHLSARHL IYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYTFNVLGGLDNEGMGCVYTYDAVGSYERVGYSSQGSGSVLIMPFLDNQLKSPSPLLLPAQDAVTPLAES EAIDLVKTCFASATERDIHTENMVLVLDVGPTMHALLPEVERVCSMLIEKKLIYHRADEVGVVLFGTEDTDNELTNEVGGYEHVVVPLNMRVVDGDLVRG VHQLPRGTVHDLDAIVVGVDLLIKKYRDTNKGKKRICLITNAQCPVKDPAEGRKEDQVSMIAKQMDTKGIAFETIVVRGPHTDGPHKRIMDENDHLLNLF STKTSAKIVYVHNPTSLLGALRTRNITPVTIFRGDLEIGLKMKIKVWVYKKTAEEKFPTLKKYSDKAPPTDKFATHDVKVDYEYRSVEDHDKMVAPEQRI KGYRYGPQVVPIASAEWDAVKFKPEKGVKLLGFADSSDVLRHYYMKDVNIFVAEPGNTRATLAISALARAMKEMSKVAIVRCVWRQGQQNVVVGVLTPNI SEKDDTPDSFYFNTLPFIEDVREFQFPSFSNFPASWQPNDKQQEAADELVKMLDLAPSGRDEFLLPDLTPNPILERFYRHLEIKSREPDAAVPPLDGALK RIIEPDPELLSENKHAIDMFRCSFEVKANPKMKKSTKNLMVDKAAGSDEEDRGYIDAPNALSANTQQVDEIGDSTPVQDFEAMMSRRDSPDWIGKAIQKM RNKIMGLLNGRPHEDVNNAKALDCLEALRKGCIMEQEPKQYNEFLRQCIELWQDKKLGVNSGFYREVASRGLTLISKSEAPDSDVREDEASRFLIKEPKE E

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10009294 [exp]	0	1
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010211 [exp]	2.8	0.8329
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	3.3	0.8345
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10021905 [exp]	3.5	0.8309
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10037610 [exp]	5.3	0.7975
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10022048 [exp]	6.3	0.7968
AT5G41770			crooked neck protein, putative...		Lus10034294 [exp]	8.9	0.7861
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10041189 [exp]	11.7	0.7925
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10013754 [exp]	12.0	0.7953
AT4G38980			unknown protein		Lus10031089 [exp]	15.5	0.7773
AT2G19080			metaxin-related (.1)		Lus10015535 [exp]	15.7	0.7586

Compare expression of checked genes

Lus10009294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.