Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64870 229 / 7e-74 unknown protein AT3G45200 220 / 2e-70 unknown protein AT5G11220 186 / 1e-57 unknown protein AT1G49290 125 / 2e-33 unknown protein AT5G13620 112 / 1e-28 unknown protein AT5G24355 70 / 7e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041678 [exp] 454 / 4e-162 AT1G64870 237 / 6e-77 unknown protein Lus10002022 [exp] 450 / 2e-160 AT1G64870 241 / 3e-78 unknown protein Lus10021560 [exp] 102 / 6e-25 AT1G49290 125 / 4e-33 unknown protein Lus10017168 [exp] 93 / 2e-21 AT5G13620 125 / 6e-33 unknown protein Lus10002905 [exp] 93 / 7e-21 AT5G11200 423 / 5e-145 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10036502 [exp] 64 / 5e-12 AT1G49290 84 / 1e-19 unknown protein Lus10041424 [exp] 63 / 3e-11 AT1G49290 90 / 7e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252800 [exp] 283 / 2e-95 AT1G64870 261 / 6e-87 unknown protein Potri.008G045000 [exp] 158 / 1e-45 AT5G13620 172 / 9e-51 unknown protein Potri.010G216400 [exp] 154 / 3e-44 AT1G64870 167 / 3e-49 unknown protein Potri.001G155600 [exp] 89 / 2e-20 AT5G13620 92 / 3e-21 unknown protein Potri.014G054900 [exp] 76 / 1e-15 AT1G64870 91 / 4e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009296 pacid=23141882 polypeptide=Lus10009296 locus=Lus10009296.g ID=Lus10009296.BGIv1.0 annot-version=v1.0 ATGGATTCCATCGCAATCACACAAGAGCAGCTACACACATATCATTCTATCGATAGATATGTGTTTTCACGTATGGTGATAAACCTTAAGCGTGACCCAG GCGAGTCCATGATCATCATAGCCGCCTGGCTATGGTTGGAACAAATGGGATACAACAACATCATCATCTTGATGACATCCCTCTCCACCGAAGCAATTGA TGTCCTCTGCGATGAGATGACTGTGGTTCTAGCCTCCCTCCAATCATCTTTGGACCTTTCCCTCTTGCTGCCGAATGATAGGTTAATGCCCGCCACATCG GCGGTCATGTCCCAAAATATTAGTGCAGAGGTCTTCCACCGTCAACGCTTCACCGCCATCACCGGAATCAAGAACTTCCTAATCACAATCTGCGCCCGAG TATTTGATGATATCTTATATCACATATGTCGTATATCAAATCCTATAGGGGAAGTGGGGACTGGCCATCTGGTGATTCAAGGGTTTCCCCACCCCTTATT TGGGGGTGTGACCATTACGCCTCCAATTTGTAGGCCCCGCTACCAGCAAGGACGCAATGGAATTGACGGTTTCGTCCCTGCAGGAGGCTTGTGGGAATGG GAACCAACTAACAACGCCACTGAGGATGACAAAACTCTGTTCCTGACATTCTCAAGGGGGTTCCCTGTGACGAAGGATGAGGTGGTGGCGCTTTTCACTC GAAAGTATGGTGAGGGGAGCGTTGTCGAAGTTATGATGCAAGAAAACGTGGTGGCTGGAGACCAACAACCGTTGTTTGCGAGGTTGATGCTAAGTTCGGT CTCCGTGGTAGATGAGGTGCTTTGTGGAGACAAGATTGCCAGATTTCGGATCAACGGAAAACATATTTGGGCGAGGAAGTACGAGCGAAGGGAACAAACA GTGACAATACCACCTTCTATGTAA
AA sequence Show only first row Show all	>Lus10009296 pacid=23141882 polypeptide=Lus10009296 locus=Lus10009296.g ID=Lus10009296.BGIv1.0 annot-version=v1.0 MDSIAITQEQLHTYHSIDRYVFSRMVINLKRDPGESMIIIAAWLWLEQMGYNNIIILMTSLSTEAIDVLCDEMTVVLASLQSSLDLSLLLPNDRLMPATS AVMSQNISAEVFHRQRFTAITGIKNFLITICARVFDDILYHICRISNPIGEVGTGHLVIQGFPHPLFGGVTITPPICRPRYQQGRNGIDGFVPAGGLWEW EPTNNATEDDKTLFLTFSRGFPVTKDEVVALFTRKYGEGSVVEVMMQENVVAGDQQPLFARLMLSSVSVVDEVLCGDKIARFRINGKHIWARKYERREQT VTIPPSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64870			unknown protein		Lus10009296 [exp]	0	1
AT1G04600		ATXIA, XIA	myosin XI A (.1)		Lus10035246 [exp]	1.4	0.8001
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	18.2	0.7128
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10041634 [exp]	20.1	0.7503
AT4G26490			Late embryogenesis abundant (L...		Lus10015606 [exp]	28.0	0.7270
AT2G18196			Heavy metal transport/detoxifi...		Lus10033250 [exp]	29.1	0.7159
AT2G39855			unknown protein		Lus10009870 [exp]	29.8	0.6978
AT5G37730			unknown protein		Lus10017628 [exp]	34.5	0.6725
					Lus10022875 [exp]	36.5	0.6958
					Lus10029617 [exp]	44.7	0.6852
AT3G51150			ATP binding microtubule motor ...		Lus10010624 [exp]	49.5	0.6438

Compare expression of checked genes

Lus10009296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.