Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45410 176 / 1e-55 AS2 LBD19 LOB domain-containing protein 19 (.1) AT4G00210 171 / 2e-53 AS2 LBD31 LOB domain-containing protein 31 (.1) AT2G45420 172 / 4e-53 AS2 LBD18, ASL20 LOB domain-containing protein 18 (.1) AT4G00220 162 / 5e-50 AS2 JLO, LBD30, ASL19 LOB DOMAIN-CONTAINING PROTEIN 30, JAGGED LATERAL ORGANS, Lateral organ boundaries (LOB) domain family protein (.1) AT3G58190 142 / 6e-42 AS2 LBD29, ASL16 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) AT2G42430 142 / 7e-42 AS2 ASL18, LBD16 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) AT3G03760 142 / 1e-41 AS2 LBD20 LOB domain-containing protein 20 (.1) AT5G06080 137 / 8e-41 AS2 LBD33 LOB domain-containing protein 33 (.1) AT2G42440 136 / 1e-39 AS2 Lateral organ boundaries (LOB) domain family protein (.1) AT2G31310 129 / 2e-37 AS2 LBD14 LOB domain-containing protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000613 [exp] 140 / 2e-41 AT3G58190 215 / 1e-70 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10000707 [exp] 141 / 3e-41 AT2G42430 222 / 2e-72 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10033873 [exp] 140 / 3e-41 AT3G58190 220 / 1e-72 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10024877 [exp] 139 / 2e-40 AT2G42430 211 / 6e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10014757 [exp] 138 / 5e-40 AT2G42430 208 / 2e-67 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10033872 [exp] 137 / 5e-40 AT2G42430 212 / 6e-69 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10004707 [exp] 126 / 5e-36 AT5G06080 154 / 1e-47 LOB domain-containing protein 33 (.1) Lus10031855 [exp] 115 / 2e-32 AT2G30130 220 / 4e-74 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10039940 [exp] 115 / 9e-32 AT5G63090 236 / 5e-80 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070300 [exp] 184 / 5e-59 AT4G00210 181 / 5e-58 LOB domain-containing protein 31 (.1) Potri.002G148900 [exp] 181 / 3e-57 AT4G00210 186 / 2e-59 LOB domain-containing protein 31 (.1) Potri.014G070400 [exp] 175 / 1e-54 AT2G45420 237 / 2e-78 LOB domain-containing protein 18 (.1) Potri.002G149000 [exp] 173 / 8e-54 AT2G45420 234 / 2e-77 LOB domain-containing protein 18 (.1) Potri.002G041200 [exp] 145 / 2e-43 AT2G42430 191 / 6e-61 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.005G221900 [exp] 142 / 4e-42 AT2G42430 209 / 3e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.010G200400 [exp] 142 / 6e-42 AT5G06080 152 / 8e-47 LOB domain-containing protein 33 (.1) Potri.002G041100 [exp] 140 / 3e-41 AT2G42440 186 / 6e-59 Lateral organ boundaries (LOB) domain family protein (.1) Potri.013G064501 [exp] 140 / 5e-41 AT3G03760 209 / 1e-67 LOB domain-containing protein 20 (.1) Potri.009G076900 [exp] 117 / 5e-33 AT2G30130 228 / 2e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10009298 pacid=23141886 polypeptide=Lus10009298 locus=Lus10009298.g ID=Lus10009298.BGIv1.0 annot-version=v1.0 ATGAGTAACAGCGGAGGAGAAAGGGGAGGCGGCGGTGGTGGAGCGGCGCCACCGTGCGGGGCGTGCAAGTTTCTAAGGAGGAAATGCGTGAAAGGTTGTA TATTCTCGCCCTACTTCGACTCCGAGCAAGGCACGGCGCACTTCGCGGCGGTGCACAAGGTGTTCGGAGCCAGCAACGCTTCGAAGCTGCTGATGAGGAT CCCTCCTCACCACCGACTGGACGCGGTGGTGACACTTTGCTACGAGGCCTTGGCCAGGGTTCGAGACCCTGTCTATGGCTGCGTCGCTCACATCTTCACC CTCCAACACCAGGTAGTGAACTTGCAGGCGGAGCTAGGATATATCCAGGCCCGCCTAGCGAATCTCCATGGGACCTCTGTGTTTGGACAACTAACCACCT CTCATCAGCCGCAGCCGCCGCAACAGCCGCACCATCAAACCACCAGCCATTCATTAGTGCCGGCAACCACAGAGGCTGCTGGGACGTTGGGCTGCATTAA TGATAACTATTATAATAATTATAAGAATGCCGTCCAATATGCTGATAATAATCAATACAATAACTGGTCGGAAATCAGCAGCAGCAGCAGCAACAACATG TACGATGAAGAAGAAATGGAGGAAATGGCTCGTGAATTTGTGGCCAGATATTTGCCTGGCGTACGCTTCCCTAAGCCTTCCAGCTAG
AA sequence Show only first row Show all	>Lus10009298 pacid=23141886 polypeptide=Lus10009298 locus=Lus10009298.g ID=Lus10009298.BGIv1.0 annot-version=v1.0 MSNSGGERGGGGGGAAPPCGACKFLRRKCVKGCIFSPYFDSEQGTAHFAAVHKVFGASNASKLLMRIPPHHRLDAVVTLCYEALARVRDPVYGCVAHIFT LQHQVVNLQAELGYIQARLANLHGTSVFGQLTTSHQPQPPQQPHHQTTSHSLVPATTEAAGTLGCINDNYYNNYKNAVQYADNNQYNNWSEISSSSSNNM YDEEEMEEMAREFVARYLPGVRFPKPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45410	AS2	LBD19	LOB domain-containing protein ...		Lus10009298 [exp]	0	1
AT1G13590		ATPSK1	phytosulfokine 1 precursor (.1...		Lus10030916 [exp]	3.9	0.8717
AT5G48130			Phototropic-responsive NPH3 fa...		Lus10001164 [exp]	8.7	0.8602
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10023637 [exp]	12.7	0.8285
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10004705 [exp]	23.4	0.8649
AT3G20015			Eukaryotic aspartyl protease f...		Lus10010157 [exp]	47.9	0.8390
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10020835 [exp]	54.4	0.8353
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10023461 [exp]	55.2	0.7925
AT3G20015			Eukaryotic aspartyl protease f...		Lus10017362 [exp]	56.3	0.8369
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10003416 [exp]	81.1	0.8192
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012039 [exp]	86.5	0.8083

Compare expression of checked genes

Lus10009298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.