Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01970 431 / 5e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G19520 226 / 7e-68 NFD5 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT2G18940 94 / 7e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35130 89 / 2e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39980 87 / 1e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G59040 81 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G18900 81 / 2e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT5G04810 79 / 5e-16 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G25630 79 / 6e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G03560 79 / 7e-16 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030026 [exp] 186 / 6e-53 AT1G19520 660 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10035298 [exp] 176 / 1e-49 AT1G19520 658 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10015865 [exp] 158 / 2e-48 AT1G01970 103 / 7e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015864 [exp] 154 / 8e-47 AT1G01970 110 / 9e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027829 [exp] 101 / 1e-23 AT3G59040 703 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005058 [exp] 99 / 2e-22 AT3G59040 623 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018318 [exp] 94 / 1e-20 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10034342 [exp] 88 / 7e-19 AT5G39980 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 87 / 1e-18 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070500 [exp] 437 / 2e-153 AT1G01970 469 / 7e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G228200 [exp] 217 / 9e-65 AT1G19520 649 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.002G034900 [exp] 150 / 7e-42 AT1G19520 296 / 2e-93 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.012G123600 [exp] 97 / 6e-22 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G166200 [exp] 89 / 2e-19 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G082400 [exp] 88 / 6e-19 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G105700 [exp] 87 / 2e-18 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G010900 [exp] 86 / 5e-18 AT5G42310 939 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G276500 [exp] 86 / 5e-18 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G049900 [exp] 85 / 6e-18 AT2G41720 1169 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009299 pacid=23141845 polypeptide=Lus10009299 locus=Lus10009299.g ID=Lus10009299.BGIv1.0 annot-version=v1.0 ATGGAAGGAGGTCGGGCTCAATATCACCAAGTTACAGAAACAGGCTATATCGCAACTCCCCCCGTGATGACCAACCGAAGCAAGGCGGTGATGAAACAGC TGATTTGCTTCTCCGACAAAAAATGGAGCCTGGTGGAATTACTGAGTACTTGGGTTGATATCATGAAGCCCACCAGAGCTGAGTGGCTTTCAGTTCTCAA GCAGCTGCTGGACACGGAGCATCCTTTGTACATTCAGGTGGCAGAATTTGCTTTACCGGAAGAATCTTTCGAGGCGAATATCCGGGACTACACAAAGCTA ATCCACTACTACGGGAAGAAACACCAGCTCGAAGATGCCGAAAGGATCTTCTCATCAATGAAGGAAAGAGGCTTAGTTTACGATCAAGTAACAGTGACAG CCATGGTTCACATGTACAGCAAGGCAGGCTACCACAAGAAGGCGGAAGAAACATTCCGCCAGCTTGCTCTGCTGGGCGAGCCATTAGATCACAGATCATA CAGCTCAATGGTAATGTCCTACATCAGAGCTCAAATGCCCCATGAAGCAGAGTCTCTCCTCAAGAAAATGGACGACCAACAAATCCCGGCAGGGCGTGAA GTTCACAAGGCATTGTTGAGAGCATACTCCATGGCTGGTGACGTGGAAGGGGCTCAGAGGGTATTTGACGCAATGCAGATGGCGGGTGTTGTTCCTGATG ACAGAATATGTGCACTACTTATCAATGCTTATGGATTGGCTGGGGAGAGTGAGAATGCACGAATTGCGTTTGAGAACATGAGGAGGGCTGGTATTGAACC AAGTGATAAGTGTGTGGCTTTGGTTCTGGGTGCATACGAGAAGGAGGAGAAGCTGAACCGGGCGTTGGAGTTTCTGGCGGGTTTGGAAAGAGATGGAGTT ATGGTTGGGAAAGAAGCTTCGGCTATATTAGCTGGATGGTTTGGAAAGTTGGGAGTTTTGAAAGAAGTAGAGAGAGTACTAAGTGAATATGAAAATGCCT CCAAGAGTTCTTCTGTGTTGCGATGA
AA sequence Show only first row Show all	>Lus10009299 pacid=23141845 polypeptide=Lus10009299 locus=Lus10009299.g ID=Lus10009299.BGIv1.0 annot-version=v1.0 MEGGRAQYHQVTETGYIATPPVMTNRSKAVMKQLICFSDKKWSLVELLSTWVDIMKPTRAEWLSVLKQLLDTEHPLYIQVAEFALPEESFEANIRDYTKL IHYYGKKHQLEDAERIFSSMKERGLVYDQVTVTAMVHMYSKAGYHKKAEETFRQLALLGEPLDHRSYSSMVMSYIRAQMPHEAESLLKKMDDQQIPAGRE VHKALLRAYSMAGDVEGAQRVFDAMQMAGVVPDDRICALLINAYGLAGESENARIAFENMRRAGIEPSDKCVALVLGAYEKEEKLNRALEFLAGLERDGV MVGKEASAILAGWFGKLGVLKEVERVLSEYENASKSSSVLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10009299 [exp]	0	1
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	3.7	0.8210
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	8.7	0.8219
AT1G31830			Amino acid permease family pro...		Lus10007593 [exp]	10.4	0.8116
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	10.7	0.8168
AT3G10110		MEE67	maternal effect embryo arrest ...		Lus10020223 [exp]	14.5	0.7795
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	15.6	0.8166
AT1G02700			unknown protein		Lus10036329 [exp]	16.3	0.7839
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10026530 [exp]	19.4	0.8027
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	21.0	0.8117
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	22.4	0.7765

Compare expression of checked genes

Lus10009299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.