Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60860 2712 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT1G01960 2603 / 0 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 1664 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 1590 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 905 / 0 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) AT1G13980 346 / 3e-97 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G39500 326 / 8e-91 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT5G19610 241 / 3e-64 GNL2 GNOM-like 2 (.1) AT5G27970 68 / 6e-11 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015863 [exp] 2355 / 0 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009244 [exp] 1815 / 0 AT3G60860 1579 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022983 [exp] 1675 / 0 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10001620 [exp] 1603 / 0 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009803 [exp] 890 / 0 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10038084 [exp] 793 / 0 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10036789 [exp] 344 / 9e-97 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10026627 [exp] 335 / 1e-93 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 330 / 8e-92 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070600 [exp] 3041 / 0 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 2997 / 0 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 1743 / 0 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 1738 / 0 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 593 / 0 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Potri.017G078900 [exp] 343 / 4e-96 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 309 / 3e-85 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 226 / 2e-59 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.013G035100 [exp] 98 / 4e-20 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09324 [flax] [poplar] DUF1981 Domain of unknown function (DUF1981) PF01369 [flax] [poplar] Sec7 Sec7 domain
Representative CDS sequence Show only first row Show all	>Lus10009300 pacid=23141848 polypeptide=Lus10009300 locus=Lus10009300.g ID=Lus10009300.BGIv1.0 annot-version=v1.0 ATGGCTTCCGATTCCCGCTTAAGCCAAGTCGTAGCCCCTGCCCTAGAGAAGGTCATCAAGAACGCATCCTGGAGGAAACACTCCAAGCTCGCGCATGAGT GTAAATCCGTTCTCGAGAGGCTCACTTCTCCGCAGAAGCAGCAGCAGCCTTCTACTCCCGATGCTGACCCTGAAGCTTCCATTCCTGGCCCTCTTCATGA TGGCGGGGCTATTGAGTACTCGCTTGCTGAATCCGAATCTATCCTCAGTCCTCTTATCAATGCTTGCAGCACTGGATTCCTCAAGATCGTGGATCCGGCC ATTGATTGCGTTCAGAAATTGATCGCTCACGGCTACTTGCGAGGGGAGGCGGACCCGACCGGTGGTGCGGAGGGGAAGCTTCTGGCTAGACTGATCGAAT CAGTTTGTAAATGCTACGATATAGGTGACGATGCAATTGAGCTTTCCGTTTTGAAAGCGCTTTTGTCCGCTGTGACTTCCATTTCCCTGCGGATACATGG AGATTGCTTGTTGCAGATAGTGAGGACTTGTTACGATATTTATCTAGGGAGCAAGAACGTTGTAAATCAGACCACGGCTAAAGCTTCCTTGATCCAAATG TTGGTCATTGTTTTCCGGAGAATGGAAGCGGATTCATCCACGGTACCCATTCAGCCCATTGTAGTGGCTGAACTAATGGAACCAGTTGAGAGATCCGATG CAGATGGGTCTATGACGATGTTTGTGCAGGGTTTCATAACCAAAATCATGCAAGATTTCGACGGAGTTTTGAACGCTGGAGGTCCTAGTAAGATTACGGT TGGAGCACACGATGGAGCCTTTGAGACTACAACGGTTGAGACCACAAACCCGGCAGATTTGTTAGATTCCACGGATAAGGATATGCTAGACGCCAAGTAT TGGGAGATTAGTATGTATAAGACCGCATTGGAAGGTAGGAAAGGCGAATTGGCAGACGGGGAAGTAGAAAGAGATGATGATTTAGAGGTTCAGATTGGTA ATAAATTAAGGAGAGATGCATTCTTGGTGTTTAGAGCTCTCTGTAAGTTGTCCATGAAAACTCCTCCAAAGGAGGCTGCAGCAGATCCTCAGTTGATGAG GGGGAAAATTGTGGCGTTGGAGTTGTTGAAGATTTTATTGGAGAATGCTGGAGCTGTTTTTAGGACCAGCGACAGGTTTTTGGGTGCCATCAAGCAGTAC TTATGCTTGTCTCTGCTGAAGAACAGTGCTTCAAGTCTCATGATCGTTTTTCAACTTTCTTGCTCTATTTTTGTGAGTCTCGTGTCAAGATTTAGAGCTG GATTGAAAGCAGAAATTGGAGTATTTTTCCCTATGATTGTGCTCAGAGTTCTGGAAAGTGTTGCTCAACCTAATTTCCAACAGAAGATGATTGTTCTACG GTTCATTGAAAAGCTCTGTGCGGATTCGCAGATCCAGGTTGATATCTTTATTAACTATGATTGTGATGTCAATTCATCGAACATATTTGAGAGAATGATC AATGGACTCCTGAAAACTGCACAAGGTGTCCCCCCTGGTACCGTAACATCGCTCATGCCACCTCAGGAGGTGACTCTGAAACTTGAAGCCATGAAGTGCC TAGTGGCCATTTTGAAATCAATGGGAGATTGGGTAAACAAACAGTTAAGAATTCCAGATCCTAGTTCTGCCAAAAAGGTTGATGCACCTGAGAACATTCC TGAAAGTAGAAGTCTTTCCTTGGTCAATGGAAATGGGGAAGAGCCAGCTGAAGGATCAGATTCTCAGTCTGAAGCCTCCACCGAAGCTTCTGATGTCTCA TCCATTGAGCAACGCAGGGCTTACAAACTGGAACTTCAGGAAGGTATTTCTCTTTTCAACCAGAAACCCAAGAAAGGAATTGAGTTTCTTATCAATGCAA ATAAAGTTGGAAATTCACCCGAAGAGATTGCTGAATTTCTAAAAAGTGCTTCTGGCTTGAACAAGACTCTTATTGGCGATTATCTAGGGGAGAGAGAAGA TTTACCGCTGAAAGTCATGCATGCATATGTGAATTCATTTGATTTTCAAGGCATGGAGTTCGATGAAGCTATAAGAGGCTTCCTCCTGGGCTTTAGGCTA CCTGGTGAGGCTCAGAAGATTGACAGAATTATGGAGAAGTTTGCTGAGCGTTACTGCAAATGCAACCCCAAAGTTTTTATCAGTGCAGACACAGCTTATG TTCTTGCTTACTCTGTGATATTGCTCAATACCGACGCCCACAATCCTATGGTGAAAAACAAGATGTCACCAGATGATTTTATTAGGAACAATCGTGGCAT TGATGATGGAAAAGATCTTCCCGAGGAATACTTAAGGTCATTGTATGAAAGGATTTCAACAAATGAGATCAAAATGAAAGAAGATGATTTTAATGTCCAA CAAAGACAGTCTACAAACTCTAACAGACTTTTGGGCTTGGATAATATTTTGAATATTGTCGTTCGTAAAAAAGGGGAGGACAGACATATGGAGACAAGTG ATGATCTCATTAGGCATATGCAAGAGCAATTTAAAGAAAAAGCTCGCAAATCTGAGTCAGTTTATTATGCAGCTACCGATGTGGTTATACTTCGTTTCAT GATTGAGGTATGCTGGGCTCCGATGTTAGCTGCCTTCAGTGTGCCTCTGGATCAAAGTGATGATGAAGTGGTGATAGGTCTTTGTCTCGAAGGTTTTCGG TGTGCTATCCATGTTACTGCTGTAATGTCCATGAAGACGCATAGAGATGCTTTTGTGACTTCATTAGCAAAGTTCACATCCCTTCACTCTCCTGCAGACA TCAAACAGAAAAATGTTGATGCAATCAAGGCAATAGTTACGATTGCAGATGAAGACGGGAATTATTTACAGGAAGCCTGGGAACATATTTTGACATGTGT CTCTCGCTTTGAACATCTCCATCTATTGGGAGAGGGCGCTCCTCCAGATGCCACATTTTTCGCCTTCCCCCAAAATGAATCTGAAAAGTCAAAACCAGTC AAGTCAAGTATCCTTCCCGTTCTGAAGAAGAAGGGTGCAGGAAGAATGCAGTATGCAGCTGCTGCTGTCCTGAGAGGTTCATATGACAGTGCTGGAATTG GAGGCAATGTTTCTGGGAGTGTCACAAATGAGCAAATGAACAGTTTGGCCTCTAATCTGAACATGTTGGAACAAGTTGGGAGCTCTGAAATGAACCGCAT ATTCACACGTAGCCAAAAGTTGAACAGTGAGGCCATCATTGACTTTGTTAAGGCTCTTTGCAAGGTATCCATGGAGGAGTTGCGTTCTGCATCTGATCCA CGAGTGTTCAGCCTTACAAAGATTGTTGAGATTGCGCATTATAACATGAACCGCATCAGGCTAGTTTGGTCAAGCATCTGGCACGTGCTCTCAGATTTCT TTGTAACCATTGGCTGTTCTGAGAACCTCTCCATTTCCATATTTGCAATGGACTCGTTGCGCCAGTTATCAATGAAGTTCTTGGAGCGTGAAGAGTTGGC TAACTATAATTTCCAGAATGAATTCATGAAGCCATTTGTCATTGTCATGCGCAAGAGCAGTGCTGTAGAGATCAGAGAACTGATTATCAGATGCGTATCT CAAATGGTTTTGTCTCGCGTGAATAATGTCAAATCAGGATGGAAGAGCATGTTCATGGTTTTCACAACAGCAGCATACGATGACCACAGAAACATTGTCC TCCTGGCTTTTGAAATAATGGAGAAGATTATTCGTGATTACTTCCCGTATATTACTGAAACTGAGACGACAGCGTTTACTGATTGTGTGAATTGCCTCAT TGCTTTCACCAATAGCCGATTTGACAAAGATATCAGCTTGAATGCAATTTCTTTCCTTCGGTATTGTGCTACAAAACTTGCAGAAGGAGATTTTGGATGT GCCTCAGGGAACAAAGAAAAGGAAGCGTTGTCAAGACTTTCTCCATCTTCACCTCACACGGGCAAAGATGTAAAGCAAGAAAATGGGTACATAGATGATA GGGAAGATCATGTATACCTTTGGTTCCCTTTGTTGGCAGGTCTGTCAGAACTTAGTTTTGATCCTAGGCCTGAAATCAGGAAGAGTGCCTTACAAATCCT GTTTGATACTTTGCGCAATCATGGCCACCTTTTCTCTCTACCTTTATGGGAACGAGTGTTCGAGTCCGTCCTGTTTCCGATATTTGACTATGTACGGCAT GCAATCGATCCAACAGGGGGTGACTCTCCTGGGCCAGGTAGTGACAGTGATTTGGGTGAGCATGATCAAGATGCATGGCTCTATGAGACTTGCACCTTGG CTCTCCAGCTGGTTGTAGATCTTTTTGTCAAGTTCTACACCACTGTCAACCCACTATTAAGGAAGGTCTTGATGCTTCTGGTTAGCTTTATTAAACGCCC TCACCAGAGCCTTGCTGGTATTGGCATTGCTGCTTTTGTTAGGTTGATGAGCAATGCTGGTGACCTTTATTCCGAGGAAAAGTGGTTAGAAGTGGTTTTG TCACTAAGAGAAGCAGCTAACGCAACTCTTCCTGATTTCACCTTTTTAGTAAGTGGTGAGAATACAGTGCCAAGCCACAGGCATGTTTTAAGTGAAGAAC CCGTCCAAGAAAATGGTGAATCTTCCGATGATCCAGAGCAGTTGATGGCGCAACGTCTTTATGCTGCAATATCTGATGCAAAGTGTCGTGCTGCTGTTCA ACTTTTGCTGATTCAGGCAGTGATGGAGATTTACAATATGTACAGGCCTCAACTTTCAGCAAAAATTACACTCGTCCTCTTCACTGTGTTGCATGACATT GCTTCCCATGCTCACAAGATCAACACGGATACCCAGCTTCGGTCAAGGTTATTGGAGTTCACCTTGATGACTCAAATGCAAGACCCTCCACTATTACGGC TGGAGAACGAATCTTTCCAAATATGCCTCACATTCTTGCAGAATCTCATAGTAGACAGGCCGTCAAGCTACGACGAGACAGAAGTGGAGTCCTGCTTAGC CAACCTCTGCCAGGAAGTTCTCAAGTTCTACATCAGCACAGCCAGTCATGGACAGGTGTCCTCTTCCTCCTCTCCAAGCGAGCGCCCTCATCCTCCGTCC CTAATCCCTTTGGGTTCTGGGAAAAGGAGGGAATTAGCTGCTCGTGCACCACTAGTAGTTGTCACTCTCCATGCCATTTGTAGTTTGGGCGAGACCTCTT TCCAGAGGAACTTGACCGTTTTCTTTCCTCTACTGTCAAGCTTGATAAGCTGCGAGCATGGGTCGAATGAGGTTCAGGTAGCTCTGAGCGAGATGCTGAG CTCGTCGGTTGGTCCAGTCTTGCTTCGGTCTTGTTGA
AA sequence Show only first row Show all	>Lus10009300 pacid=23141848 polypeptide=Lus10009300 locus=Lus10009300.g ID=Lus10009300.BGIv1.0 annot-version=v1.0 MASDSRLSQVVAPALEKVIKNASWRKHSKLAHECKSVLERLTSPQKQQQPSTPDADPEASIPGPLHDGGAIEYSLAESESILSPLINACSTGFLKIVDPA IDCVQKLIAHGYLRGEADPTGGAEGKLLARLIESVCKCYDIGDDAIELSVLKALLSAVTSISLRIHGDCLLQIVRTCYDIYLGSKNVVNQTTAKASLIQM LVIVFRRMEADSSTVPIQPIVVAELMEPVERSDADGSMTMFVQGFITKIMQDFDGVLNAGGPSKITVGAHDGAFETTTVETTNPADLLDSTDKDMLDAKY WEISMYKTALEGRKGELADGEVERDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEAAADPQLMRGKIVALELLKILLENAGAVFRTSDRFLGAIKQY LCLSLLKNSASSLMIVFQLSCSIFVSLVSRFRAGLKAEIGVFFPMIVLRVLESVAQPNFQQKMIVLRFIEKLCADSQIQVDIFINYDCDVNSSNIFERMI NGLLKTAQGVPPGTVTSLMPPQEVTLKLEAMKCLVAILKSMGDWVNKQLRIPDPSSAKKVDAPENIPESRSLSLVNGNGEEPAEGSDSQSEASTEASDVS SIEQRRAYKLELQEGISLFNQKPKKGIEFLINANKVGNSPEEIAEFLKSASGLNKTLIGDYLGEREDLPLKVMHAYVNSFDFQGMEFDEAIRGFLLGFRL PGEAQKIDRIMEKFAERYCKCNPKVFISADTAYVLAYSVILLNTDAHNPMVKNKMSPDDFIRNNRGIDDGKDLPEEYLRSLYERISTNEIKMKEDDFNVQ QRQSTNSNRLLGLDNILNIVVRKKGEDRHMETSDDLIRHMQEQFKEKARKSESVYYAATDVVILRFMIEVCWAPMLAAFSVPLDQSDDEVVIGLCLEGFR CAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNVDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQNESEKSKPV KSSILPVLKKKGAGRMQYAAAAVLRGSYDSAGIGGNVSGSVTNEQMNSLASNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSASDP RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSISIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSSAVEIRELIIRCVS QMVLSRVNNVKSGWKSMFMVFTTAAYDDHRNIVLLAFEIMEKIIRDYFPYITETETTAFTDCVNCLIAFTNSRFDKDISLNAISFLRYCATKLAEGDFGC ASGNKEKEALSRLSPSSPHTGKDVKQENGYIDDREDHVYLWFPLLAGLSELSFDPRPEIRKSALQILFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRH AIDPTGGDSPGPGSDSDLGEHDQDAWLYETCTLALQLVVDLFVKFYTTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGDLYSEEKWLEVVL SLREAANATLPDFTFLVSGENTVPSHRHVLSEEPVQENGESSDDPEQLMAQRLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPQLSAKITLVLFTVLHDI ASHAHKINTDTQLRSRLLEFTLMTQMQDPPLLRLENESFQICLTFLQNLIVDRPSSYDETEVESCLANLCQEVLKFYISTASHGQVSSSSSPSERPHPPS LIPLGSGKRRELAARAPLVVVTLHAICSLGETSFQRNLTVFFPLLSSLISCEHGSNEVQVALSEMLSSSVGPVLLRSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	0	1
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	1.4	0.9679
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	1.4	0.9684
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	2.0	0.9595
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	2.4	0.9654
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	3.5	0.9545
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	4.5	0.9578
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	4.5	0.9457
AT1G60070			Adaptor protein complex AP-1, ...		Lus10029177 [exp]	6.5	0.9496
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	6.6	0.9422
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	6.9	0.9131

Compare expression of checked genes

Lus10009300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.