Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45430 181 / 5e-55 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G22810 180 / 2e-54 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G12050 178 / 1e-53 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT3G60870 166 / 1e-49 AT-hook AHL18 AT-hook motif nuclear-localized protein 18 (.1) AT2G35270 160 / 4e-47 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT4G14465 156 / 6e-46 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT1G76500 157 / 9e-46 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) AT3G04570 156 / 2e-45 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT4G35390 152 / 3e-44 AT-hook AGF1 AT-hook protein of GA feedback 1 (.1) AT2G42940 148 / 6e-43 AT-hook Predicted AT-hook DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015862 [exp] 323 / 1e-110 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1) Lus10006577 [exp] 163 / 4e-48 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10020763 [exp] 158 / 9e-47 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10031460 [exp] 147 / 1e-43 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10031458 [exp] 139 / 2e-40 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10000519 [exp] 141 / 1e-39 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 137 / 5e-38 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10042551 [exp] 124 / 2e-33 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1) Lus10022010 [exp] 118 / 2e-31 AT4G14465 198 / 7e-63 AT-hook motif nuclear-localized protein 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070800 [exp] 202 / 2e-63 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.002G149300 [exp] 199 / 3e-62 AT2G45430 226 / 1e-72 AT-hook motif nuclear-localized protein 22 (.1) Potri.001G115200 [exp] 186 / 4e-57 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.003G116900 [exp] 185 / 9e-57 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.005G257200 [exp] 173 / 4e-52 AT1G76500 192 / 2e-59 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) Potri.010G074201 [exp] 162 / 6e-48 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.010G200100 [exp] 162 / 2e-47 AT3G55560 209 / 2e-65 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.002G003800 [exp] 161 / 2e-47 AT1G76500 186 / 6e-57 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) Potri.013G044500 [exp] 158 / 2e-46 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1) Potri.008G058700 [exp] 158 / 5e-46 AT3G55560 192 / 5e-59 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10009301 pacid=23141850 polypeptide=Lus10009301 locus=Lus10009301.g ID=Lus10009301.BGIv1.0 annot-version=v1.0 ATGGATCATCATCCAGTTACAGCCAGCCGAGGACACCTACTTCCTCCTCCTTTCAACGTTCGATCAGATCTCCATCCTCACCAGTTTCAACAATTTCAGC AGCATTCGGATCAGCAAAGCATGATGATGACGATGATGATGAATCGCAGCCAGAAGCGAGACCACGACGAAATACTCAGCCCAGATAACAATAATTCCAA CAACAACAACAACGAATTAACGCCGTCCTCCTCCGAGCAACCGTCCGGTCAAACCACCAAATCGAAAACTAAGAGACCCAGAGGAAGACCGGCCGGCTCG AAGAACAAGCCCAAGCCGCCAGTAATAATCACCCGAGACTCGGGTAACGCCCTCCGATGCCACATCATCGAGATAGCCGACTCCGCCGACATTATCCATA GCGTCTCCACTTTCGCCGCCCGCCGCCAGCGTGGGGTCTGCATCCTCAGCGGAAGCGGCGCGGTCAACAACGTCACCATCCGACAGCCCGCCGGATCTGT GGCGAGCCTCCAAGGCCGGTTTGAGATCCTCTCCCTTTCAGGCTCTTTCTTACCTCCGCCAGCGCCGCCTGCTGCCTCCGGGTTGACTATCTACCTCAGC ATCGGACAAGGCCAGGTCGTCGGCGGCAGCGTAGTTGGACCCTTGCTTGCGTCCGGTCCGGTTGTTGTAATGGCTGCTTCATTTGGGAATGCAGCCTATG AGAGGCTGCCGCTTCAGGAGGCGGAGGATGAAGTGGGCCAGCCACCGTCTGGTGCTACTACGACGGCGACGAATACTCCGCCGCAGCAGCAGATGATTGG AGATGCTCCCAACAGAATGTCTGATGAGAATGTGATGAGGTCGGTGCAAATGGGCGGAGGCGGAGGAGGAGGAGGGTATTGGGGATCCAGCGCCGCATCT GGTTCTTCTCCTCCTCCGTTCTAG
AA sequence Show only first row Show all	>Lus10009301 pacid=23141850 polypeptide=Lus10009301 locus=Lus10009301.g ID=Lus10009301.BGIv1.0 annot-version=v1.0 MDHHPVTASRGHLLPPPFNVRSDLHPHQFQQFQQHSDQQSMMMTMMMNRSQKRDHDEILSPDNNNSNNNNNELTPSSSEQPSGQTTKSKTKRPRGRPAGS KNKPKPPVIITRDSGNALRCHIIEIADSADIIHSVSTFAARRQRGVCILSGSGAVNNVTIRQPAGSVASLQGRFEILSLSGSFLPPPAPPAASGLTIYLS IGQGQVVGGSVVGPLLASGPVVVMAASFGNAAYERLPLQEAEDEVGQPPSGATTTATNTPPQQQMIGDAPNRMSDENVMRSVQMGGGGGGGGYWGSSAAS GSSPPPF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	0	1
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	1.0	0.9866
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	1.7	0.9752
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	2.0	0.9709
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	2.4	0.9791
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031696 [exp]	3.5	0.9646
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	3.7	0.9696
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	3.9	0.9703
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10006618 [exp]	4.4	0.9585
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	4.5	0.9584
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	6.5	0.9699

Compare expression of checked genes

Lus10009301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.