Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45440 573 / 0 DHDPS2 dihydrodipicolinate synthase (.1) AT3G60880 560 / 0 DHDPS, DHDPS1 dihydrodipicolinate synthase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015861 [exp] 689 / 0 AT2G45440 605 / 0.0 dihydrodipicolinate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G149500 [exp] 577 / 0 AT2G45440 592 / 0.0 dihydrodipicolinate synthase (.1) Potri.014G071100 [exp] 575 / 0 AT2G45440 585 / 0.0 dihydrodipicolinate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00701 [flax] [poplar] DHDPS Dihydrodipicolinate synthetase family
Representative CDS sequence Show only first row Show all	>Lus10009302 pacid=23141878 polypeptide=Lus10009302 locus=Lus10009302.g ID=Lus10009302.BGIv1.0 annot-version=v1.0 ATGGTTGCGTTGAAAGCTTACACCGCCGTCACTTCCCTACGACCTACTTGCTCACCTGACACCTTCAAAACCAAAAGGAGGATCGCTAAGCTGACACCTC CTCAAGCTGCTGTAATACCAAACTTCCATCTTCCAATGCGTAGCTTCGAAGTTAAAAATAGGACAGCGGCTGAAGACATAAAAGCTGTTAGATTGATTAC TGCAATCAAGACCCCATATCTGCCTGATGGTCGGTTCGATCTCGAAGCATACGATGCTTTAGTAAACATGCAGGTAGCTGATGGTGTTGAAGGTGTGATT GTGGGTGGTACGACCGGTGAAGGTCAGTTGATGAGTTGGGATGAGCACATAATGTTGATTGGTCACACGGTCAACTGTTTTGGTGGCTCAATCAAGGTGA TTGGGAACACCGGGAGTAACTCCACAAGAGAAGCAATTCATGCTACCGAACAAGGATTTGCAGTAGGGATGCATGCTGCTCTTCACATCAATCCCTACTA TGGAAAAACCTCGTTGGAAGGTATGGTTTCGCACTTTGAACATGTCTTACCCATGGGTCCGACAATCATCTACAATGTGCCGTCTAGGACCGGGCAAGAC ATCCCACCGGGTGTGATTCACGCCCTGGCGCAAAGTCCTAACCTTGCCGGAGTTAAAGAATGTGTCGGCCATGACAGGGTCGAGGAGTACACTAAGAATG GGATTGTGGTGTGGAGTGGGAACGATGACCAGTGCCATGATTCAAGGTGGGATTATGGTGCCATGGGAGTGATCTCCGTTACTAGCAACTTGGTTCCTGG TTTGATGAGTCAACTGATGTTTGGAGGCAAGAATGGTTCGCTGAATGCAAAGCTGCTGCCTTTGATGGATTGGCTGTTCACGGAGCCGAACCCAATTGGT TTGAACACTGCTCTTGCGCAGCTGGGGGTGGTTAGACCAGTTTTCAGACTGCCGTATGTTCCTCTTCCCCGGGCGAAGAGGGTTGAGTTTGTGGATTTGG TGAAGGAGATTGGCAGGGAGCACTTTGTTGGGGATAAAGATGTTCAAGTTATGGAGGACGATGACTTCATTTTGGTTGGGCGTTATTAG
AA sequence Show only first row Show all	>Lus10009302 pacid=23141878 polypeptide=Lus10009302 locus=Lus10009302.g ID=Lus10009302.BGIv1.0 annot-version=v1.0 MVALKAYTAVTSLRPTCSPDTFKTKRRIAKLTPPQAAVIPNFHLPMRSFEVKNRTAAEDIKAVRLITAIKTPYLPDGRFDLEAYDALVNMQVADGVEGVI VGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGMVSHFEHVLPMGPTIIYNVPSRTGQD IPPGVIHALAQSPNLAGVKECVGHDRVEEYTKNGIVVWSGNDDQCHDSRWDYGAMGVISVTSNLVPGLMSQLMFGGKNGSLNAKLLPLMDWLFTEPNPIG LNTALAQLGVVRPVFRLPYVPLPRAKRVEFVDLVKEIGREHFVGDKDVQVMEDDDFILVGRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10009302 [exp]	0	1
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10000165 [exp]	6.5	0.9216
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10026465 [exp]	8.8	0.8761
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10018109 [exp]	9.9	0.9084
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	10.7	0.9252
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10020055 [exp]	12.4	0.9236
AT5G12260			unknown protein		Lus10036072 [exp]	12.5	0.8920
AT5G27700			Ribosomal protein S21e (.1)		Lus10029895 [exp]	13.8	0.9206
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	14.8	0.9215
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	15.7	0.8944
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10023548 [exp]	18.9	0.8876

Compare expression of checked genes

Lus10009302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.