Plant FIBer expression Database

Lus10009303 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45460 701 / 0 FHA SMAD/FHA domain-containing protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015860
[exp]
1592 / 0 AT2G45460 733 / 0.0 SMAD/FHA domain-containing protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G071400
[exp]
961 / 0 AT2G45460 816 / 0.0 SMAD/FHA domain-containing protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0357 SMAD-FHA PF00498 FHA FHA domain
Representative CDS sequence
>Lus10009303 pacid=23141857 polypeptide=Lus10009303 locus=Lus10009303.g ID=Lus10009303.BGIv1.0 annot-version=v1.0
ATGCTCACAGCCGGCGAAGCAAATCCTGGAGCTACTACAGCGCCGGCAGTTGAAAATCCGGGGCCTACCCCCAAGGACGAAGACTCGTCTCCCAAGAAGC
CGGTGACCAAACGGGACTTCATCCTCTCCGTCGCCTCTAATCTCTCTTCTCAGCCTCTCACCAACCCTGACCCCAATGTGTGGGGCGTTCTCACTGCCAT
TTCCAACAACGCCCGTAAGCGCCACCAGGGGATGAACATGCTGCTGACTGGCGATGAACACTGCATTGGCCGATTGGTGGAAGATAAGCGATTTCGAGTT
GATTCGAATTCGATTAGTGGAAATCACTGCAGAATATATAGGAAAAGGGTTGATTTGAATAGTCCATTCACGGCTGTGTTTCTCAAAGATACTAGTTCCA
ATGGTACTTATCTTAACTGGGAAAAGTTGACTAAGCGCGGAGCGGAAGCTAAAATGCAGCATGGTGATATCGTGTCATTTGCCGCTGCTCCTCAGCATGA
GCTTGCATTTGCCTTTGTATTTCGAGAGGTGCAGAATTCTATATCAGGGCTGGACATTGTCAATGCAAAAAGAAAAGCAGAAGAAGTTCACGGGGTAAAT
AAAAGAATGAAAGGTCTTGGCATCGGTGCTCCTGATGGTCCCATATCGCTTGATGATTTTAAAAGTCTTCAGCGCTCAAACACGGATCTGAGGAAGCAAG
TGGAAGCTCATGTTCTTACAATTGACGCATTGCAGAAAGAACTTCGGGACACCATTGAGCGTCGGGAAAATGAAATGAAAGAGGTATCTGAATCTGCTGC
AAGACCACACATTGATCAACTACAGAAGCTGCAACATATGTTAGACCTTGAAAGGAATGAGCGGAGTAAAGTCAGTAAAATATCAGCTGATCAACAACGC
TCCTTAGAAGAGCTCAATGAAAGATTGTTAGCATCCAGGCAGTCGTGTATGGAAGCAAATGAGATAATGAAAAGCCAGAAGGCATCAATAGGCGAGCTTG
AAGCACAAATGGAAGAAGAACGAGATCAGAGAAAAGAAGAAAGACTAAAAGCTGCTGCAGATTTAAAGGCTGCTGTACAGAGAGTTCAATTTGAGGCTCA
AGAAGAAATCAAGAAACTGACTTATGCTGGAGCATATCGGGAAAAAGAATTAGAAGAAGAAATCAATAAGCTTCAGGAAAGAGAGAAAAAGTGGTGCTCA
CAGGTTGAAATTTTGAGGCCCAAACTGGAAGAAGCAAGGCAAAAGTCAGTTATAACAGATAATAAACTCCGCCAACTAGAAGCTCAAATTTCCGAAGAGC
AGCTTGCTTCTTCAAACGGAAGAAAGAGGGTGGAAGAACTTGAACAAGAAATGAGAAGACTGAGAAAAGAGCTGGACAGTGAAAAGCAGGCTGCTCGAGA
GGAAGCATGGGCTAAAGTATCAGCTTTGGAACTAGAGATAAACTCGGCAGTGCATGATCTTGAGTATGAGAGGCGTAGGTTAAAGGGTGCTAGGGAAAGA
ATCATGCTCAGGGAAACACAGCTGAGAGCATTTTACTCAACAACCGAGGAGATATCTTCACTATTTTCCAAGCAGCAGCAACAGCTGAAGGCTATGCAAA
AGACTTTAGAAGATGAGGAGAATTACGAGAATGGATCACTGGATCTTGACCTTAACATAACCAATGGGCCTACAGATGACACGGTCGTCGCAAGGAAACA
ATCTAGCTATAATGCTGGTTCAAAGTCTGGCTTTGCTACTTCCGCTAGAGGATCTAATAGAAACCAACCGGCTACCTCGAACGATGAAGGGAGCGCAACT
GAAAACCATGATTGTGATAATAACAGAAGTCAAAGGGATGACCAGAATACCCAAGGTGAAGAGTTCACTAGTGCTGCTTGTGAAGTTAGGGGTGGCGGCT
TTGGTTCAAATATTGATGTCGATACAGCACCAGCTCTTGATGGAGGTCCCATTGATATGGAGCAAGTTGTTGAAACCGAGAGCCCTCTGATTAATGCTGG
ACGGAGCTCTGATCTGAACAAGTTTGGCTCTTTAGCAGAGGATACAATGCAGCTCGATGATGATGCTGAAGTACAAGAGACCGACGAGAGAGTTGAAACT
ATTCCTGAAAATCAGAGGGAAATGGATAACACAGAACCGGGAGGGACGATGAGGACTGTAGACCTTATAGCTTCCGAAGTGGCTGGGAGTTGGGTTCAGA
GCACAGCTCCTTCTATTCAAGGAGACAATGGATCCCAACAAAGTAGAGGTGGAGTAGGGATTCGAGATTTGGTGAGTCACGTAGCGGAGAGTCAGACGAC
CATCTCTTCGAATACTGCAGCCACGACGAAGCGAAGTCGTGAGTATCAAGCTTTGAGTGAGATGATTGGGATCGTTGCGCCTGATCTGAAGGAGCAATTC
GGTGGTGGGTCTGTGAATGATGATTCTGATGTGGAGAAGGAAGAAAGGGTGGAGGGTTCATCAAGTTCTGATACTGAATGTTGCAGCGATACCGACAATA
TGCACAGAGACAATACCAAAGCAGCTATTTCGGATTCGGAGACAGAGGGGAGTGATGTAGGTGGTAAAGGAGATGGAAAACCGGGTAGTGATGCTATGGA
TGAAGATGATGAAACTCAAGTAGACTCCGTTTCGTAG
AA sequence
>Lus10009303 pacid=23141857 polypeptide=Lus10009303 locus=Lus10009303.g ID=Lus10009303.BGIv1.0 annot-version=v1.0
MLTAGEANPGATTAPAVENPGPTPKDEDSSPKKPVTKRDFILSVASNLSSQPLTNPDPNVWGVLTAISNNARKRHQGMNMLLTGDEHCIGRLVEDKRFRV
DSNSISGNHCRIYRKRVDLNSPFTAVFLKDTSSNGTYLNWEKLTKRGAEAKMQHGDIVSFAAAPQHELAFAFVFREVQNSISGLDIVNAKRKAEEVHGVN
KRMKGLGIGAPDGPISLDDFKSLQRSNTDLRKQVEAHVLTIDALQKELRDTIERRENEMKEVSESAARPHIDQLQKLQHMLDLERNERSKVSKISADQQR
SLEELNERLLASRQSCMEANEIMKSQKASIGELEAQMEEERDQRKEERLKAAADLKAAVQRVQFEAQEEIKKLTYAGAYREKELEEEINKLQEREKKWCS
QVEILRPKLEEARQKSVITDNKLRQLEAQISEEQLASSNGRKRVEELEQEMRRLRKELDSEKQAAREEAWAKVSALELEINSAVHDLEYERRRLKGARER
IMLRETQLRAFYSTTEEISSLFSKQQQQLKAMQKTLEDEENYENGSLDLDLNITNGPTDDTVVARKQSSYNAGSKSGFATSARGSNRNQPATSNDEGSAT
ENHDCDNNRSQRDDQNTQGEEFTSAACEVRGGGFGSNIDVDTAPALDGGPIDMEQVVETESPLINAGRSSDLNKFGSLAEDTMQLDDDAEVQETDERVET
IPENQREMDNTEPGGTMRTVDLIASEVAGSWVQSTAPSIQGDNGSQQSRGGVGIRDLVSHVAESQTTISSNTAATTKRSREYQALSEMIGIVAPDLKEQF
GGGSVNDDSDVEKEERVEGSSSSDTECCSDTDNMHRDNTKAAISDSETEGSDVGGKGDGKPGSDAMDEDDETQVDSVS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G45460 FHA SMAD/FHA domain-containing pro... Lus10009303
[exp]
0 1
AT5G60710 Zinc finger (C3HC4-type RING f... Lus10041321
[exp]
3.5 0.7753
AT1G44760 Adenine nucleotide alpha hydro... Lus10029664
[exp]
9.5 0.7767
AT5G51980 C3HZnF Transducin/WD40 repeat-like su... Lus10033255
[exp]
13.2 0.7630
AT5G18590 Galactose oxidase/kelch repeat... Lus10043420
[exp]
15.9 0.7381
AT1G05490 CHR31 chromatin remodeling 31 (.1) Lus10003003
[exp]
16.6 0.7483
AT2G32230 PRORP1 proteinaceous RNase P 1 (.1) Lus10043223
[exp]
17.5 0.7347
AT4G13650 Pentatricopeptide repeat (PPR)... Lus10040997
[exp]
19.9 0.7480
AT5G40380 CRK42 cysteine-rich RLK (RECEPTOR-li... Lus10008764
[exp]
20.1 0.6863
AT5G55390 EDM2 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10038454
[exp]
21.8 0.6816
AT2G47230 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724... Lus10010060
[exp]
23.4 0.7604

Lus10009303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.