Plant FIBer expression Database

Lus10009304 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45520 134 / 3e-39 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015859
[exp]
326 / 1e-114 AT2G45520 139 / 2e-41 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G072400
[exp]
134 / 6e-39 AT2G45520 96 / 3e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10009304 pacid=23141839 polypeptide=Lus10009304 locus=Lus10009304.g ID=Lus10009304.BGIv1.0 annot-version=v1.0
ATGGGAGGCAAAGGACTGCGGCGGCGAGAGAAGAACTACCGAGCTGCCCATGGAGGCGATTCCCGCCTCCCTCCGCCTCCTGATGCTGCCAAACATGACG
CTTTTCCCTCCAAGCTCCGCAAACTCATGACCTTCGTTTCAACTCCTCACGACAATGGTTCTTCTGATAAGCAGCCGCCGACCAAGAAGAGGAAAGGAGG
CGCTGTCGATGAACCTCACCGGCCGGATAACTTGCCGACCCGAGCCAAACAAAGCGTGGAAGACGATAATGATGATGGTGATGAAAGTAAGAAGAAGAAG
AACAAGAAGAGGAAGAGAAATCAGATGAAGGATCTTCGATTCGAATCGCTGACTGGGAACACCAAAACCAAGGAGAAACGGAAGGAGCGCAAGAAAAAAT
ACTTGGAAGCAAAGAAGAAGAGGAAGCAGCATAACTCTGTTGCAGATGAGAATGCAGATGATTTCCCTGAAAAGGATCATGTGCAGTTTGGAGATGTCGT
TCAAGCCCCACCCAAGCTCAAGTCTTTACCAAAGGGTGTGAAGAAGGTGATGGGAGCTTCAAAAGAGAGGCTGAGGTTAGAAGCCATTGAGAATTACAGG
AACCTGAAAGGGTGGAAACCCAGGCCAGTGCTTCAATTTCCTTCTATAACTATGGAATGA
AA sequence
>Lus10009304 pacid=23141839 polypeptide=Lus10009304 locus=Lus10009304.g ID=Lus10009304.BGIv1.0 annot-version=v1.0
MGGKGLRRREKNYRAAHGGDSRLPPPPDAAKHDAFPSKLRKLMTFVSTPHDNGSSDKQPPTKKRKGGAVDEPHRPDNLPTRAKQSVEDDNDDGDESKKKK
NKKRKRNQMKDLRFESLTGNTKTKEKRKERKKKYLEAKKKRKQHNSVADENADDFPEKDHVQFGDVVQAPPKLKSLPKGVKKVMGASKERLRLEAIENYR
NLKGWKPRPVLQFPSITME

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G45520 unknown protein Lus10009304
[exp]
0 1
AT3G26350 unknown protein Lus10011406
[exp]
1.4 0.8514
AT1G16560 Per1-like family protein (.1.2... Lus10031765
[exp]
3.5 0.8506
AT3G18165 MOS4 modifier of snc1,4 (.1) Lus10018001
[exp]
4.0 0.8309
AT5G22480 ZPR1 zinc-finger domain protei... Lus10015454
[exp]
4.7 0.7757
AT5G40660 ATP12 protein-related (.1) Lus10000142
[exp]
5.2 0.8311
AT2G19480 NFA2, NFA02, NA... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10027615
[exp]
9.5 0.7890
AT3G03750 SUVR3, SDG20 SET domain protein 20 (.1.2) Lus10003864
[exp]
9.9 0.7652
AT5G27990 Pre-rRNA-processing protein TS... Lus10002404
[exp]
10.2 0.8155
AT4G00525 unknown protein Lus10030386
[exp]
10.9 0.8101
AT5G48970 Mitochondrial substrate carrie... Lus10037508
[exp]
11.0 0.7941

Lus10009304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.