Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45540 1815 / 0 WD-40 repeat family protein / beige-related (.1.2) AT3G60920 501 / 1e-149 unknown protein AT1G58230 440 / 6e-128 binding (.1) AT1G03060 367 / 1e-103 SPI SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT4G02660 363 / 2e-102 Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT5G18525 112 / 1e-24 protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases (.1) AT5G25150 46 / 0.0002 TAF5 TBP-associated factor 5 (.1) AT3G49660 44 / 0.0007 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015858 [exp] 1547 / 0 AT2G45540 1209 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10015857 [exp] 1006 / 0 AT2G45540 2610 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10042866 [exp] 425 / 5e-123 AT1G58230 2871 / 0.0 binding (.1) Lus10028167 [exp] 421 / 3e-121 AT1G58230 3404 / 0.0 binding (.1) Lus10018744 [exp] 372 / 8e-106 AT1G03060 2581 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Lus10024828 [exp] 363 / 1e-102 AT1G03060 4870 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Lus10023903 [exp] 48 / 6e-05 AT3G21540 1223 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10033802 [exp] 47 / 0.0001 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10012475 [exp] 47 / 0.0001 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G150000 [exp] 2026 / 0 AT2G45540 3620 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.014G072600 [exp] 2002 / 0 AT2G45540 3647 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.002G111000 [exp] 429 / 3e-124 AT1G58230 3474 / 0.0 binding (.1) Potri.002G047700 [exp] 370 / 6e-105 AT1G03060 5063 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Potri.005G215400 [exp] 370 / 7e-105 AT1G03060 5153 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Potri.010G153300 [exp] 113 / 8e-25 AT5G18525 1878 / 0.0 protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases (.1) Potri.005G148500 [exp] 45 / 0.0003 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF02138 [flax] [poplar] Beach Beige/BEACH domain
Representative CDS sequence Show only first row Show all	>Lus10009305 pacid=23141890 polypeptide=Lus10009305 locus=Lus10009305.g ID=Lus10009305.BGIv1.0 annot-version=v1.0 ATGGATGCCAATGGAAACTGGATTGAACTCCCGTTGGTGAAAAAGTCTGTTCAGATGCTTCAGGCTTTATTGTTAGATGAGTCCGGTCTTGGTGGTGGAC TTGGTATTGGTGGAGGATCTGGCACTGGCATGGGTGCAATGACTGCTTTATACCAATTATTGGATAGTGACCAACCGTTCTTATGCATGCTGCGGATGGT GCTTCTATCCATGAGGGAGGAGGACAACGGAGAGACAAGTGTTCTCACAAGGAATGTCAGCATGAAAGAAAGCAATACTATGAGGCAACCGCACTCAGCA TTATTGTGGAGCGTTCTTTCCCCTGTTCTCAACATGCCGATTTCAGACTCAAAGAGGCAAAGAGTATTAGTTGCATCATGTGTTATGTATTCTGAGGTAT GGCATGCCATTGGAAGGGACAAAAAACCTCTTCGTAAAGTGTACCTTGAGTCAATTTTGCCACCTTTTGTTGCTGTTCTGCGGAGATGGCGCCCAATTCT AGCGGGAATTCATGATCTTCCGACCGCCGATGGTTTAAATCCTCTTGCCGTCGATGATGCTGCATTAGCTGCTGATGCACTCCCTGTTGAGGCGGCCCTC AAGATGATATCTCCAGATTGGGCAGCTGCTTTTGCATCACCACCAGCTGCGATGGCATTGGCAATGATTGCTGCTGGTGCTTCTGGAGGGGAAACCCTGG CTCCCCAGGCAGTTTCACATCATCTTAGGCGAGACTCCTCATTGCTTGAACGAAAAAAAGCCAAGCTTCAAACATTTTCAAGCTTCCAGAAACCACTAGA GGGAAGTAACAGAACACCAGGCCTCCCCAAGGACAAGGCAGCTGCAAAAGCTGCTGCACTTGCTGCTGCACGTGATCTAGAAAGAAATGCTAAGATTGGT TCTGGAAGAGGCTTGAGTGCCGTAGCAATGGCCACATCTGCTCAACGAAGGACTGCCAGTGACCGAGATCGTGTCACAAGGTGGACTATTTCGGAAGCCA TGGGAGTTGCCTGGCTGGAGTGTCTGCAACCAGCTGACACAAGATCTGTCTATGGAAAAGATTTCAATGCTCTATCCTATAAGTTTATTGCAGTCCTTGT TGCAAGTTTTGCTTTGGCCAGAAACATGCAAAGATTGGAGGTTGACCGACGTGCTCACGTGGATGTTGTAGCTCGGCATCATTTTCTCAGGGGAAATCGT GCATGGAAAAAGCTCATACATCACTTGATCGAGATAAAGAGCCTTTTTGGACCATTTGCGATGCACTTTGACAATCCTGAACGTATCTTTTGGAAGCTTG ACCTCATGGAAAGCGCCTCCAGGATGAGACGATGCTTGAGGAGAAACTATGATGGATCTGATCATTTTGGTGCTGCTGCTAACTATGAGGATGAGATGAA GACTGTACACAGAGAAGAAAATGTCCCTCTGCTGGCTGCTGAAGCAATCTCAATGGAAGGGGTAAAGGAAGACGAAGAACATGAGATGGGTAATTTGGAT AGTGCAGCTGATGATACGCGGATCAGTGAAGATAATCAGTCAGGAGTGTCCGGGACAACTGATCAAAATGCACACCAGCCGTTAGAATCCTCTGAATCTC AACTTGTGAATGTTCAGGTGTTAGATAGAACGTCATCAATGGCTATTGGATATGTCCCAAGCGAGCTTGATGAAAGGATTATTCTTGAGCTTCCTTCATC TATGGTCCGGCCACTGAGGGTCATACAAGGAACCTTTCAAGTAACAAGCAGGAGAATGAACTTCATAGTTGATGGAATTGAAGGCAACTGTTTGGAAGGA ACAGAATCTTCTGAAGTGGCAAACCAGGAAAAGGATTATAGCTGGTCGATGTCCTCCCTGCATCAGATTTATAGCCGAAGGTATCTACTAAGAAGAAGTG CTTTGGAATTATTCATGGTTGACCGATCGAACTTCTTCTTTGATTTTGGGAGTACTGAGGGGCGCAGAAGTGCTTATAGGGCAATTGTTCAGTTACGCCC TCCTCATTTGAACAACATTTATCTGGCAACACAGAGACCTGAACAACTTCTGAAGAGAACGCAGCTTATGGAGCAGTGGGCTAGGTGGGAGATTAGCAAT TTTGAGTATCTAATGCAGTTGAATACCTTGGCTGGACGTAGTTACAATGATATCACCCAGTATCCTGTTTTCCCATGGGTTCTGTCTGATTACACTTCTA ACAGCTTAGATCTCTCCAAGCCTTCTTCTTACAGGGATCTCTCGAAGCCGGTTGGCGCTTTGAATCCTGAACGACTCAAAAAATTCCAAGAGAGATATGC TAGCTTTGACGATCCAGTAATTCCAAAATTTCACTATGGTTCTCACTACTCAAGTGCTGGGACGGTGTTATATTATCTTGGCCGAATTGAACCTTTCACA ACCCTCTCAATCCAATTACAAGGTGGAAAATTCGATCATGCAGACAGGATGTTTTTTGATATTTCTTCTACTTGGAATGGGGTTCTAGAGGACATGAGTG ATGTGAAGGAATTGGTCCCAGAGCTGTATTATCTTCCTGAGATGTTAACCAACGAAAATTCCATAGACTTTGGAACAACACAGTTAGGAGGGAAGTTAGA CTCGGTTAAACTTCCTCCCTGGGCTGAAAACCCAGTTGACTTCATTAATAAACATCGGATAGCACTTGAGAGTGAAAATGTATCTGAACACTTGCATGAA TGGATTGATCTAATTTTTGGATATAAACAACGAGGAAAAGAAGCTATAACAGCAAATAATGTCTTCTTTTACATAACCTACGAAGGGACTGTTGACATTG ATAAGATAGCAGACCCAATACAACAACGTGCTACACAAGACCAGATTGCTTACTTTGGACAGACTCCATCCCAACTTCTGACAGTTCCCCACTTGAAAAG GATGCCCTTGTCAGATGTTCTTCAGTTGCAGACCATTTTCCGGAACCCGAAAGAAGTCAAACCATATCCTATTCCAGCCCCTGACCGTTGCAATCTTCCT GCTGCTGCTATTCGTGCATCTTCTGATAGAGTTGTAATTGTCGATATAAAAGCTCCAGCAGCACACGTTGCACAGCACAAGTGGCAACCCAACACTCCTG ATGGCCAAGGGTCACCTTTCCTTTTTGAACATGGGAAGACCTCTGCAAATTCAGCTGGTGGAGCATTCATGCGCATGTTCAAAGGGCCAGCTGGTTCTGG TGATGACTGCCAATTTCCCCAAGCATTGGCATTTCCTTCTTCTGGGATCAGAAGCACAGCTGTGGTTTCCATCACACATGACAACGAAGTTATAACTGGT GGGCATGCAGATAATAGTATAAAGCTGATATCAGCAGATGGAGCAAAAACCTTAGAAACAGCAGTCGGGCACTGTGCTCCAGTCACTTGTCTTGCTCTGT CACCAGATAGCAATTATCTTGTTACAGGATCACGGGACACGACGGTGTTACTCTGGAAGATACACAAGGCATCCTCCCTCACAAGCAGCACGGTAGATCA AGCCACAAACAGCAACACACCAACTTCTGGAAGCAATTCCTTGACAGAGAAAAATAGACAACCTCGTATTGAGGGTCCAATCCATGTTCTTCGGGGTCAC CGCAGAGAAATACTATGTTGTTCTGTCAGTTCAGATCTAGGTATTGTTGTTTCTTGCTCTGAATCATCAGATCTTTTGGTGCACTCCATAAGAAGAGGCC GCTTGATCCGAAGACTGGTTGGAGTGGAGGCCCATGCTGTTTGCCTTTCGCCAGAAGGGATTATATTGGTTTGGAACAAAATAGAACGTAATCTAAGTAC TTTTAGTGTTAACGGGGTATCGATTGCGAAAGCAAATCTTCCTTTGTCTGGAGACGTCAGTTGCATTGAAGTTTCAGCAGATGGCAGGAGTGCTTTGGTT GGAATGAACTGCAGTGGGGAAGCTGATAATACTTCAAATATCAACAAGGACTTCAGAATATGGAAGCAGGGATCTGAAGAGCGTGATCCAGACTCGGATG AAATTCAAGAAACAAAGAGACTCGATGTTCCATCCCCGTCAATTTGTTTCATGGATCTGCATACGTTACAGGTGTTTCATGTGCTAAAACTAGGAGAAGG CCAGAACATTACAGCTCTGGCTATGAACGATGATAACACAAATCTTGTGCTGTCGACTGCAGATAAACAGTTGATAATCTTCACCGATCCAGCTCTGAGC TTGAAAGTGGTGAATCAGATGCTGAAGCTTGGATGGGAAGGCGACGGTCTAATGGTATAA
AA sequence Show only first row Show all	>Lus10009305 pacid=23141890 polypeptide=Lus10009305 locus=Lus10009305.g ID=Lus10009305.BGIv1.0 annot-version=v1.0 MDANGNWIELPLVKKSVQMLQALLLDESGLGGGLGIGGGSGTGMGAMTALYQLLDSDQPFLCMLRMVLLSMREEDNGETSVLTRNVSMKESNTMRQPHSA LLWSVLSPVLNMPISDSKRQRVLVASCVMYSEVWHAIGRDKKPLRKVYLESILPPFVAVLRRWRPILAGIHDLPTADGLNPLAVDDAALAADALPVEAAL KMISPDWAAAFASPPAAMALAMIAAGASGGETLAPQAVSHHLRRDSSLLERKKAKLQTFSSFQKPLEGSNRTPGLPKDKAAAKAAALAAARDLERNAKIG SGRGLSAVAMATSAQRRTASDRDRVTRWTISEAMGVAWLECLQPADTRSVYGKDFNALSYKFIAVLVASFALARNMQRLEVDRRAHVDVVARHHFLRGNR AWKKLIHHLIEIKSLFGPFAMHFDNPERIFWKLDLMESASRMRRCLRRNYDGSDHFGAAANYEDEMKTVHREENVPLLAAEAISMEGVKEDEEHEMGNLD SAADDTRISEDNQSGVSGTTDQNAHQPLESSESQLVNVQVLDRTSSMAIGYVPSELDERIILELPSSMVRPLRVIQGTFQVTSRRMNFIVDGIEGNCLEG TESSEVANQEKDYSWSMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSTEGRRSAYRAIVQLRPPHLNNIYLATQRPEQLLKRTQLMEQWARWEISN FEYLMQLNTLAGRSYNDITQYPVFPWVLSDYTSNSLDLSKPSSYRDLSKPVGALNPERLKKFQERYASFDDPVIPKFHYGSHYSSAGTVLYYLGRIEPFT TLSIQLQGGKFDHADRMFFDISSTWNGVLEDMSDVKELVPELYYLPEMLTNENSIDFGTTQLGGKLDSVKLPPWAENPVDFINKHRIALESENVSEHLHE WIDLIFGYKQRGKEAITANNVFFYITYEGTVDIDKIADPIQQRATQDQIAYFGQTPSQLLTVPHLKRMPLSDVLQLQTIFRNPKEVKPYPIPAPDRCNLP AAAIRASSDRVVIVDIKAPAAHVAQHKWQPNTPDGQGSPFLFEHGKTSANSAGGAFMRMFKGPAGSGDDCQFPQALAFPSSGIRSTAVVSITHDNEVITG GHADNSIKLISADGAKTLETAVGHCAPVTCLALSPDSNYLVTGSRDTTVLLWKIHKASSLTSSTVDQATNSNTPTSGSNSLTEKNRQPRIEGPIHVLRGH RREILCCSVSSDLGIVVSCSESSDLLVHSIRRGRLIRRLVGVEAHAVCLSPEGIILVWNKIERNLSTFSVNGVSIAKANLPLSGDVSCIEVSADGRSALV GMNCSGEADNTSNINKDFRIWKQGSEERDPDSDEIQETKRLDVPSPSICFMDLHTLQVFHVLKLGEGQNITALAMNDDNTNLVLSTADKQLIIFTDPALS LKVVNQMLKLGWEGDGLMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	0	1
AT3G60920			unknown protein		Lus10009306 [exp]	1.4	0.9681
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Lus10019679 [exp]	2.0	0.9627
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	3.0	0.9595
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037525 [exp]	4.0	0.9593
AT3G08530			Clathrin, heavy chain (.1)		Lus10030393 [exp]	5.0	0.9586
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	5.5	0.9483
AT1G79570			Protein kinase superfamily pro...		Lus10031173 [exp]	5.5	0.9448
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	6.0	0.9548
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	7.7	0.9377
AT1G35220			unknown protein		Lus10036487 [exp]	7.9	0.9513

Compare expression of checked genes

Lus10009305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.