Plant FIBer expression Database

Lus10009306 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45540 104 / 2e-26 WD-40 repeat family protein / beige-related (.1.2)
AT3G60920 103 / 5e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015857
[exp]
163 / 6e-47 AT2G45540 2610 / 0.0 WD-40 repeat family protein / beige-related (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G150000
[exp]
127 / 1e-34 AT2G45540 3620 / 0.0 WD-40 repeat family protein / beige-related (.1.2)
Potri.014G072600
[exp]
119 / 2e-31 AT2G45540 3647 / 0.0 WD-40 repeat family protein / beige-related (.1.2)
PFAM info
Representative CDS sequence
>Lus10009306 pacid=23141884 polypeptide=Lus10009306 locus=Lus10009306.g ID=Lus10009306.BGIv1.0 annot-version=v1.0
ATGGAGCTGGATTCAAGACGGGGAGAATCGCTACCTATATTTAAACGAAGGCTCTTGGGTGGTTTGCTGGATTTTGCTGCTAGGGAACTACAAGCTCAGA
CTCAGATCATTGCTGCAGCTGCTGCCGGTGTTGCAGCTGGGGGTTTATCCCCAGAAGAGGCTAAGGCAGAAGCTGAAGATGCTGCTCAACTTTCGGTAGC
ATTGGTTGAAAATTCTATTGTCATTCTAATGCTTGTGGAAGATCATTTACGTCTGCAGAGCAAGCTTTCTTGCTCATCTCGCACTGATTGTTCTCCATCC
CCCCTTTCTCTTGTATCGCCATTGAATCTCCGTTCAAGTTCTAGTACAAATACATTGGATGGTGTGGCTGATCGAAAATCTAACGACTCAGGGGGACTAC
CACTTGATGTATGTACACTTGTCTTGGCTAGTGATAAGTACATTCAACTCCTAACTAGAGGCTACATTCCATTGAAACAACAAAAGTTTTAA
AA sequence
>Lus10009306 pacid=23141884 polypeptide=Lus10009306 locus=Lus10009306.g ID=Lus10009306.BGIv1.0 annot-version=v1.0
MELDSRRGESLPIFKRRLLGGLLDFAARELQAQTQIIAAAAAGVAAGGLSPEEAKAEAEDAAQLSVALVENSIVILMLVEDHLRLQSKLSCSSRTDCSPS
PLSLVSPLNLRSSSSTNTLDGVADRKSNDSGGLPLDVCTLVLASDKYIQLLTRGYIPLKQQKF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G60920 unknown protein Lus10009306
[exp]
0 1
AT2G45540 WD-40 repeat family protein / ... Lus10009307
[exp]
1.0 0.9892
AT2G45540 WD-40 repeat family protein / ... Lus10009305
[exp]
1.4 0.9681
AT4G38200 SEC7-like guanine nucleotide e... Lus10015863
[exp]
3.0 0.9671
AT4G31570 unknown protein Lus10020133
[exp]
3.2 0.9654
AT1G03060 SPI SPIRRIG, Beige/BEACH domain ;W... Lus10024828
[exp]
4.0 0.9664
AT1G52360 Coatomer, beta' subunit (.1.2) Lus10037525
[exp]
5.2 0.9606
AT5G19390 Rho GTPase activation protein ... Lus10036048
[exp]
6.0 0.9481
AT2G21390 Coatomer, alpha subunit (.1) Lus10035884
[exp]
6.5 0.9646
AT2G22125 POM2, CSI1 POM-POM 2, cellulose synthase-... Lus10019679
[exp]
6.6 0.9565
AT4G38200 SEC7-like guanine nucleotide e... Lus10022983
[exp]
7.5 0.9545

Lus10009306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.