Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45540 1332 / 0 WD-40 repeat family protein / beige-related (.1.2) AT3G60920 935 / 0 unknown protein AT1G58230 83 / 1e-15 binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015857 [exp] 2140 / 0 AT2G45540 2610 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10028167 [exp] 57 / 2e-07 AT1G58230 3404 / 0.0 binding (.1) Lus10042866 [exp] 52 / 4e-06 AT1G58230 2871 / 0.0 binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G150000 [exp] 1548 / 0 AT2G45540 3620 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.014G072600 [exp] 1530 / 0 AT2G45540 3647 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.002G111000 [exp] 86 / 2e-16 AT1G58230 3474 / 0.0 binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009307 pacid=23141843 polypeptide=Lus10009307 locus=Lus10009307.g ID=Lus10009307.BGIv1.0 annot-version=v1.0 ATGGACGAAGAAGAAGAGAAGAAGGAGACGAGAGGGATTTCTAGGGAGGATTCGGAGATCTTCGAAGAAGTTAGTGTAGTAGATACATCCCGTGAAAATA ATGTCAATACAATGGGTAGAGATGATGATCCAGTGAATAACAATTTTGTATCATCGGAAGGGCCGGATTCTGCCGCTCGAGGTATGAATGAAGAACAGTT TGAACAGGTTTCTTTGAAAGATCAAGGAAAGGCTACCGTGGATTCAAATCAGTTGTCCTATACAGGGAACGGGAGGTACTCGTCCAGTCAATTTGAAGAG GCCTCTGAAAAGTTTCCAAATAGTCCTGGGTCTGAGCACGACTATTCTCCCATCTCTGAGTTCCCTCCCGATCAATCTTTATCTAGCCCTCCCCCAGAAG CTCAATTTGGTTACAGTTACGACCAGTCTTATTCACCAACTAGTATAGACTCATCCTACTATGGAGATGGATTCTCACCGCAGAAGGCTAAGCTAAAAGC TGCCATGCCAAATGTTTCTCCAGAGTTGTTACATTTGGTAGACTCTGCTATTATGGGGAAGTCAGAAAGCTTGGACAAACTTAGGAAAATTGTTAGTGGT GCTGAGAGGTTTGAGAGTGCTGAGGATCCAGAGAATATAGCTTATGCAATTGTCGACTCCCTTCTTGCCACTATGGGGGGAGTTGAAAGTTTTGAGGATG AAGATAATAATCCTCCAAGTGTAATGTTGAACTCTCGTGCTGCAATTGTGGCAATGGCTGGATTTCTAAGAATTCTTATAGGAACTGCAGAAATGATATT TATGCAGGATGCTGGTTCAAAGGAAGAGATGAAATGGGATGCAACTCCATTGTGTGCTTGCATCCAGCACTTAGCAGGACACACTTTGCCAGTAACTGAT TTGCATAGATGGCTACAAGCAATCACCAAAACAACTAAAACTGAATGGGCACCTCGTTTGATGGATGCATTGGAAAAGGCAATGGGAGGAAAGGAATCCA AGGGACCGGCATGCACTTTTGAGTTTGATGGTGAAAGCTCTGGTTTGCTTGGACCAGGGGAGAGCCGTTGGCCATTCCCCAATGGGTATGCATTTGCAAC ATGGATCTACATTGAATCATTTGCAGATACCTTAAACGCAGCTACTGCAGCTGCTGCAATTGCTGCAGCTGCAGCAGCCACGACAGGGAAGTCATCTGCT ATGTCAGCTGCAGCTGCAGCCAGTGCACTTGCTGGTGAAGGCACTGCTCATATGCCAAGATTGTTCAGTTTTTTATCTGCAGATAACCAAGGGATAGAGG CATACTTCCATGCACAGTTTTTGGTTGTTGAAAGTGGTAGCGGGAAGGGCAAGAAGGCGTCCTTGCACTTCACTCATGCATTCAAGCCACAGTGCTGGTA TTTTATTGGGTTGGAGCAGATCAGCAAGCAAGGACTGATTGGTAAAGCAGAGAGCGAATTGAGACTTTATATTGATGGTTCCCTGTATGAAAGCCGTCCT TTTGAGTTTCCTAGGATCACCAAACCACTTGCCTTTTGCTGCATTGGCACAAACCCTCCTCCCACAATGGCGGGTTTGCAACGTCGTCGTCGACAGTGCC CATTGTTTGCTGAAATGGGCCCTGTTTATATCTTCAAAGAACCAATTGGTCCTGAGCGGATGGCGCGTTTGTCTTCTAGGGGAGGGGATGTGCTACCTAC CTTTGGAAATGGTGCAGGTGTTCCCTGGCTTGCAACAAATGATCATGTTCGTGCCAAGGCAGAAGAAAGTTCAGTTTTGGATGATGAGATTGGAGGACTC ATTCACCTTCTCTACCACCCAAGTGCCCTCAGTGGTCGTTTCTGTCCAGATGCTTCTCCTTCTGGTTCTGCAGGAGTTCTTCGGAGACCAGCTGAGATTC TTGGGCAAGTTCATGTTGCCACACGAATGAGACCGGTCGAAGCTTTGTGGGCTTTGGCTTACGGAGGGCCCATATCTTTACTTCCTCTGGTGGTGAGCAA AGTGCATAAAGACAGTCTGGAACCTGCACATGGGGATCTGCCTTTATCACTGGCAACTGGTGGGCTTGCTGCTTCAGTATTCCGGATTATTTCTATTGCT ATTCAACATCCTGGAAATAATGAAGAGCTGTCTCGGACTAGAGGCCCTGAAGTTCTCACAAAGATTTTATGTTATCTTCTTCAAACATTGTCTTCATTAG ATGCCAGGAAGCATAATGGTGCAGAAGATGAGGAACTTGTTGCTGCTGTTGTCTCCTTATGTCAATCGCAAAAGTATAATCATACTCTGAAGGTTCAGCT TTTCAGTACTCTACTATTGGATCTGAAAATTTGGAGCTTATGCAACTATGGACTGCAGAAGAAACTTCTTTCATCCCTAGCTGACATGGTTTTCTCACAG TCGTTGGTCATGAGAGAAGCTAATGCCATTCAGATGCTTCTTGATGGTTGTAGAAGATGTTATTGGACTATCCGTGAAAAGGACTCTGTGAATACTTTTT CATTGGACGAGGCACCACGCCCTATGGGTGAAGTAAATGCTTTGGTTGATGAGCTCTTGGTAATAATTGAACTTCTAATAGGAGGAGCTTCCACTCCAAT GGCTTCAGCTGATATCCAATGTCTGCTTGGTTTTATTGTGGATTGCCCTCAACCCAATCTGCTTGCCAGGATGTTGCATCTCGTCTATCGTCTGGTAGTG CAGCCAAATGCAGCTAGATCTAACACGTTTGCTGAGGCATTCATGAAATGTGGAGGCATAGAAACCCTTCTTGTTTTGCTGCAGAGGGAGGCCAAAGCTG GAGATAATAGTATTCCAGAAGCAATTGAAAGGAGTCATATTCAAGAAACTAAGCCAGAGAGTGATCAGGAGGTCTTGGATGTAAATCGGAAGGATGAAGT AGAAACTTTGAGTAAAAATAACTCAACCTCTGAAGAAACTTGGTCTGGATCCAAGTCAAACTCATCTCTGGGAGGTGGTGGTCCTACTGCCTCTTCATCC GGACAGATCGCAAGGTTGTCGTCTGTTGCTGAAGCTACTTTCACGAATTTGGGTGGCATAAGTCTTTCGATTACTGCTGATAATGCAAGGAATAATGTCT ATAATGCTGACAAAAGTGATGGGGTGATTGTCGCAATCATTGAGCTATTAGGTGCTCTAGTGAGATCTGGGCATTTAAAAGTCGGACCACATGTACCCCT AGACTTGACGAGTAACTTTCTGGGTGGTTTGCTGCAAGATGGAGGTGGTACAATGTTTGACGATAAGGTGTCTCTTCTACTTTTTGCACTGCAGAAGACA TTCCAAGCGGCACCGAATAGGCTTTTGACTACAAATGTCTACACTTCTCTACTAGGAGCCTCGATTAACGTGTCTTCAACAGAGGATGGGTTAAACTTCT ACGATGCTGAACATTGCTTTGAGCATTTGCAACTACTTTTGGTTCTTCTGCGTTCACTACCTTATGCATCTTGGGGTTTTCAAGATCGAGCATTGCAGAG GGTTGAAACAAAAGCTTCCGATGTGTCAGGCTTAGTGGACATAGAGGACCTTATTCATAACTTCTTGAGTATAATGTTGGAGCACTCTATGCGACAGAAG GATGGTTGGAAGGTAACCTATCCATTTGCTGATATTCAATTCCTTCTCAGTTTCTAG
AA sequence Show only first row Show all	>Lus10009307 pacid=23141843 polypeptide=Lus10009307 locus=Lus10009307.g ID=Lus10009307.BGIv1.0 annot-version=v1.0 MDEEEEKKETRGISREDSEIFEEVSVVDTSRENNVNTMGRDDDPVNNNFVSSEGPDSAARGMNEEQFEQVSLKDQGKATVDSNQLSYTGNGRYSSSQFEE ASEKFPNSPGSEHDYSPISEFPPDQSLSSPPPEAQFGYSYDQSYSPTSIDSSYYGDGFSPQKAKLKAAMPNVSPELLHLVDSAIMGKSESLDKLRKIVSG AERFESAEDPENIAYAIVDSLLATMGGVESFEDEDNNPPSVMLNSRAAIVAMAGFLRILIGTAEMIFMQDAGSKEEMKWDATPLCACIQHLAGHTLPVTD LHRWLQAITKTTKTEWAPRLMDALEKAMGGKESKGPACTFEFDGESSGLLGPGESRWPFPNGYAFATWIYIESFADTLNAATAAAAIAAAAAATTGKSSA MSAAAAASALAGEGTAHMPRLFSFLSADNQGIEAYFHAQFLVVESGSGKGKKASLHFTHAFKPQCWYFIGLEQISKQGLIGKAESELRLYIDGSLYESRP FEFPRITKPLAFCCIGTNPPPTMAGLQRRRRQCPLFAEMGPVYIFKEPIGPERMARLSSRGGDVLPTFGNGAGVPWLATNDHVRAKAEESSVLDDEIGGL IHLLYHPSALSGRFCPDASPSGSAGVLRRPAEILGQVHVATRMRPVEALWALAYGGPISLLPLVVSKVHKDSLEPAHGDLPLSLATGGLAASVFRIISIA IQHPGNNEELSRTRGPEVLTKILCYLLQTLSSLDARKHNGAEDEELVAAVVSLCQSQKYNHTLKVQLFSTLLLDLKIWSLCNYGLQKKLLSSLADMVFSQ SLVMREANAIQMLLDGCRRCYWTIREKDSVNTFSLDEAPRPMGEVNALVDELLVIIELLIGGASTPMASADIQCLLGFIVDCPQPNLLARMLHLVYRLVV QPNAARSNTFAEAFMKCGGIETLLVLLQREAKAGDNSIPEAIERSHIQETKPESDQEVLDVNRKDEVETLSKNNSTSEETWSGSKSNSSLGGGGPTASSS GQIARLSSVAEATFTNLGGISLSITADNARNNVYNADKSDGVIVAIIELLGALVRSGHLKVGPHVPLDLTSNFLGGLLQDGGGTMFDDKVSLLLFALQKT FQAAPNRLLTTNVYTSLLGASINVSSTEDGLNFYDAEHCFEHLQLLLVLLRSLPYASWGFQDRALQRVETKASDVSGLVDIEDLIHNFLSIMLEHSMRQK DGWKVTYPFADIQFLLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45540			WD-40 repeat family protein / ...		Lus10009307 [exp]	0	1
AT3G60920			unknown protein		Lus10009306 [exp]	1.0	0.9892
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018743 [exp]	1.4	0.9792
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10024828 [exp]	1.7	0.9788
AT2G21390			Coatomer, alpha subunit (.1)		Lus10035884 [exp]	2.8	0.9750
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	3.9	0.9744
AT5G23110			Zinc finger, C3HC4 type (RING ...		Lus10001530 [exp]	4.2	0.9679
AT4G31570			unknown protein		Lus10020133 [exp]	5.7	0.9648
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	6.0	0.9662
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10001216 [exp]	6.5	0.9678
AT2G46560			transducin family protein / WD...		Lus10005975 [exp]	8.0	0.9669

Compare expression of checked genes

Lus10009307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.