Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45600 340 / 9e-117 alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 290 / 3e-97 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 266 / 8e-88 ATCXE20 carboxyesterase 20 (.1) AT1G68620 160 / 1e-46 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 155 / 1e-44 ATCXE17 carboxyesterase 17 (.1) AT5G06570 139 / 9e-39 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G63010 136 / 4e-37 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 134 / 1e-36 ATCXE18 carboxyesterase 18 (.1) AT1G47480 130 / 2e-35 alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 128 / 2e-34 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002019 [exp] 171 / 1e-50 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10008439 [exp] 167 / 3e-49 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002907 [exp] 165 / 2e-48 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10015989 [exp] 161 / 7e-47 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 166 / 2e-45 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017587 [exp] 157 / 4e-45 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10013774 [exp] 157 / 4e-45 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10036168 [exp] 155 / 1e-44 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033548 [exp] 155 / 1e-44 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G073000 [exp] 409 / 4e-144 AT2G45600 352 / 2e-121 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466166 [exp] 375 / 9e-131 AT2G45600 335 / 5e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466400 [exp] 372 / 2e-129 AT2G45600 330 / 1e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466200 [exp] 371 / 4e-129 AT2G45600 330 / 1e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466300 [exp] 369 / 3e-128 AT2G45600 328 / 3e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G150900 [exp] 276 / 4e-91 AT2G45610 320 / 3e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G137100 [exp] 274 / 7e-91 AT5G62180 323 / 3e-110 carboxyesterase 20 (.1) Potri.014G073100 [exp] 225 / 3e-73 AT2G45600 175 / 8e-54 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G101400 [exp] 175 / 5e-52 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.017G113700 [exp] 172 / 6e-51 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10009308 pacid=23141896 polypeptide=Lus10009308 locus=Lus10009308.g ID=Lus10009308.BGIv1.0 annot-version=v1.0 ATGGATCCATTTCGCTTCCTCAAAATATCCCTAAACCCAGACGGCTCCCTCACCCGAACCCTCCATATCCCTTCGGTCCCTCCCTCCGATCGACCCGACC CATATGCCGATCCGCCCCAACTCGCTCTCTCCAAGGACGTCCCTCTCAATCCGGCCTCCAAAACCACCATCCGCATCTACCGCCCTACCTCCACCCTCAC CGGCAAGCTCCCCGTCGTCATCTACTTCCACGGCGGCGGATTCATCCTTCACAGCACCGCTACCGTCTTTTGGCACGAATCCTGCAACCTAATGTCCTCC AAAGTCCCCGCCCTATTCCTCTCCGTCGATTACCGCCTCGCCCCTGAGCACCGCCTCCCGGCGGCGTACGACGACGCCGTTGACGCCCTGATGTGGGTCC GGGACCAGGCGATCAACGGCTCCGATCCATGGATGAAGGAACTCGCGGATTACTCCAGGTGTTTCATTATGGGCAGCAGCGCCGGAGGAAATATCGCCTA CTTCGCAGGTCTACGCTCACTTAATATGGATCTCGCGCCCGTCAATATCGGAGGGCTGATATTGCACGTGCCGTACTTCGGTGGGTTCCAGAGGACGGAT TCTGAGGTCAGGCTAAAAGACGATAAGATCCTCCCGATGGCTGCCAACGATCTGATGTGGTCCCTATCTCTGCCGGAAGGCGCGGATCGGGACCATGAGT ACTGCAATCCGAGCACCGTTGGATCGATGGACGAGAGGATCGGACGGCTGCCGAGATGCTATGTAGGGGGCTACGGTGGGGATCCGTTGGTGGACAAGCA GAGGGAGTTGGTGAAGAAGCTGGAGTCACGCGGCGTGCACGTGGTGAGTAGATTCGACGAGGATGGGTTTCATGGTGTTGAGTTTTTCGATAGGGCCAAG GCCAGGGCTTTGAACGAGGATCTGAGCCAGTTTGTTAACGGTGTAGCTAAGTCGACGCTGTGA
AA sequence Show only first row Show all	>Lus10009308 pacid=23141896 polypeptide=Lus10009308 locus=Lus10009308.g ID=Lus10009308.BGIv1.0 annot-version=v1.0 MDPFRFLKISLNPDGSLTRTLHIPSVPPSDRPDPYADPPQLALSKDVPLNPASKTTIRIYRPTSTLTGKLPVVIYFHGGGFILHSTATVFWHESCNLMSS KVPALFLSVDYRLAPEHRLPAAYDDAVDALMWVRDQAINGSDPWMKELADYSRCFIMGSSAGGNIAYFAGLRSLNMDLAPVNIGGLILHVPYFGGFQRTD SEVRLKDDKILPMAANDLMWSLSLPEGADRDHEYCNPSTVGSMDERIGRLPRCYVGGYGGDPLVDKQRELVKKLESRGVHVVSRFDEDGFHGVEFFDRAK ARALNEDLSQFVNGVAKSTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45600			alpha/beta-Hydrolases superfam...		Lus10009308 [exp]	0	1
AT5G64660		ATCMPG2	"CYS, MET, PRO, and GLY protei...		Lus10005810 [exp]	1.4	0.8319
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10030495 [exp]	5.7	0.8138
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10041823 [exp]	10.8	0.8044
AT2G34250			SecY protein transport family ...		Lus10007313 [exp]	11.0	0.7580
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022766 [exp]	14.0	0.7805
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10016464 [exp]	14.5	0.7703
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10016640 [exp]	21.4	0.8073
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	21.5	0.7838
AT2G34250			SecY protein transport family ...		Lus10029262 [exp]	27.3	0.7638
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	30.6	0.7733

Compare expression of checked genes

Lus10009308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.