Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45620 557 / 0 Nucleotidyltransferase family protein (.1) AT3G45750 106 / 2e-23 Nucleotidyltransferase family protein (.1.2) AT3G45760 90 / 9e-19 Nucleotidyltransferase family protein (.1.2) AT2G39740 87 / 8e-18 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) AT5G53770 66 / 5e-11 Nucleotidyltransferase family protein (.1) AT4G00060 59 / 1e-08 MEE44 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015854 [exp] 1163 / 0 AT2G45620 661 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009310 [exp] 713 / 0 AT2G45620 557 / 0.0 Nucleotidyltransferase family protein (.1) Lus10001012 [exp] 86 / 2e-17 AT2G39740 391 / 6e-132 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10030154 [exp] 85 / 6e-17 AT2G39740 396 / 7e-134 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10008574 [exp] 54 / 4e-07 AT5G53770 552 / 0.0 Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151000 [exp] 655 / 0 AT2G45620 629 / 0.0 Nucleotidyltransferase family protein (.1) Potri.014G073300 [exp] 620 / 0 AT2G45620 575 / 0.0 Nucleotidyltransferase family protein (.1) Potri.010G199500 [exp] 70 / 3e-12 AT2G39740 446 / 3e-153 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Potri.001G400800 [exp] 65 / 1e-10 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03828 [flax] [poplar] PAP_assoc Cid1 family poly A polymerase
Representative CDS sequence Show only first row Show all	>Lus10009309 pacid=23141894 polypeptide=Lus10009309 locus=Lus10009309.g ID=Lus10009309.BGIv1.0 annot-version=v1.0 ATGTCCGGCGGCGGCGGCGGCGGCGGGGACCCTTCACCTGGGCAGTATTCTAACGGCGGCGAGTTCCTCCTCTCTTTGCTCCAAAGGCCCACCAACAACC ATCCCCACACGCCGTCTCCTTCGCAACCTCAATTCACTGCTCCCTTCATTCTTCCTCAGCCGCAACAATTTCACGATCCGGCGGTTGCAACAGTTGGCCA GGGTTACTCGTACGCGCCACCGCCGTGGGGAGCCAACCGCCTAGATCTGCCGTCGTCTTCGTTACCCCATGGTCCTCTGCCTCCTGAACTACTCGGATTT CCTCCCAATCATTGGCCTTCGTCGAACCAGCTGCAAGCCAGCCAATCTAGAACCCTAATTGATGATCTGCGCCGATTAGGGTTTCCCAGCTTTGACGCCG GAGTCAATGCTGCCATCAATGGTTTGCTTCAGCAGCAGCAGGATCAGCAAGTTCAGCAGAAATTACAGTTTGGCTCATTCCAGAATGATATTCAACTTGC GGAAACCCCTGTTAAGGATTTGGAAAAGGCGGTAGGTAATATAAGTTTGAAAGGATTAGTAAATAATCCGCAATTGGATGGGAAACTAAGCCCGCCAATC CCTAGGGATTTTAGTTACGAGAAGCAGGATCGAAGTGGAGGGGGTGTGAACTGGGGCAAGCATCAGCAGCAGCAAGGAGGGAATTACAATGCCGTGCAAG GACAGCGAAAGCCTGCACCACCTCCTGGATTTTCAAATCAACAGAGAGTTGTACATTCGGATAATGGGAATAGGAGAAGAGAACCAGATCACAATGTGGC TCGAGAAAGAGTGAATCAGAATGAGCACAATCGTAAGGAGGAGTGGGTGAAGCGCAGTATAGCCTCTGCTGAGCCAGGAATTACTAGACAGCTAGACAGG CCTGGTATTCCTTCTGGCACTAATCTGCCTTCTGTTTCGGGATCAGAAGTTGAAGAAGCTATGACGCAATTGCATTCTGAGATAGTTGATGAGGATGATC ATGGATTGGAGGATGATCATGGTGAAGAACTTGTTGATTCTTTGTTGCGTGAGGTTGATCCTGGTCCTGGTGACGGTAGCAAAGACAAGAAGCAAACTCG TAATTCACGAGACAAGGAATCAAGAGTGGATAACCGAGGGCATCTTATGTTAAACCAAAGGATGAGAAACTACAAGAGGCAGCAGATACAATGTCGCAGA GACATAGATCGATTCAATGTGCCGTTTCTTGTAATTTACGAGTCGTTGATACCACCAGAGGAAGAGAAAGAAAAACAGAAGCAACTGTTGACATTATTGG AGAAACTGGTTAACAAGGAGTGGCCAGAAGCTAGGTTATTCCTTTATGGTTCCTGTGCCAACTCTTTTGGAGTTTTGAAGAGTGATGTTGATGTCTGCCT TGCAATTGAAGATGGTGATTCAAATAAATCTGAGATCTTGTTAAGGTTGGCTGACATATTGCAATCCGACAACCTCCAAAACGTTCAGGTGAACAATATT CCTTTCTTTGCTGTTGCTATGAGGGAAAAGGTTAAGGCGCTAACCCGAGCTAGGGTGCCCATAGTTAAACTTATGGATCCGGCGACTGGGATCTCCTGTG ATATATGCATAAACAATGTTCTTGCTGTAGTAAATACAAAGCTTCTTCGCGACTATTCACATATTGATGTTAGACTGCGGCAGTTAGTTTACATCGTTAA ACACTGGGCCAAATCAAGATCGGTTAACGAGACTTACCATGGGACTCTATCCAGCTATGCATATGTTCTCATGTGCATTCACTTTCTACAACAGCGTAGG CCAGCTATCTTACCATGCTTGCAGAGAATGGAGGCAACATACTCTGTCACTGTGGACGATATTGAATGTTCGTATTTCGATCAAGTAGAGAAACTCCATG GCTTTGGATCCTGTAACAGGGAATCAATCGCTCAGCTGGTATGGGGTTTCTTCTATTACTGGGCTTACTGTCATGATTATGCAAACACGGTGGTATCTGT GCGTAAAGGCAGCACCATCAGCAAACGGGAGAAAGACTGGACGAGGAGGGTAGGGAACGACCGGCATCTGATTTGCATAGAGGACCCGTTCGAGGTAACG CACGATCTTGGAAGGGTGGTGGATAGGTTCAGCATAAGAGTGTTGAGGGAAGAATTTGAAAGAGCTGCTGATGTTTTGCAGCATGATCAGAACCCGTGTG TAACCCTGTTTCAACCCTATGTTCCCCTTGGCTGA
AA sequence Show only first row Show all	>Lus10009309 pacid=23141894 polypeptide=Lus10009309 locus=Lus10009309.g ID=Lus10009309.BGIv1.0 annot-version=v1.0 MSGGGGGGGDPSPGQYSNGGEFLLSLLQRPTNNHPHTPSPSQPQFTAPFILPQPQQFHDPAVATVGQGYSYAPPPWGANRLDLPSSSLPHGPLPPELLGF PPNHWPSSNQLQASQSRTLIDDLRRLGFPSFDAGVNAAINGLLQQQQDQQVQQKLQFGSFQNDIQLAETPVKDLEKAVGNISLKGLVNNPQLDGKLSPPI PRDFSYEKQDRSGGGVNWGKHQQQQGGNYNAVQGQRKPAPPPGFSNQQRVVHSDNGNRRREPDHNVARERVNQNEHNRKEEWVKRSIASAEPGITRQLDR PGIPSGTNLPSVSGSEVEEAMTQLHSEIVDEDDHGLEDDHGEELVDSLLREVDPGPGDGSKDKKQTRNSRDKESRVDNRGHLMLNQRMRNYKRQQIQCRR DIDRFNVPFLVIYESLIPPEEEKEKQKQLLTLLEKLVNKEWPEARLFLYGSCANSFGVLKSDVDVCLAIEDGDSNKSEILLRLADILQSDNLQNVQVNNI PFFAVAMREKVKALTRARVPIVKLMDPATGISCDICINNVLAVVNTKLLRDYSHIDVRLRQLVYIVKHWAKSRSVNETYHGTLSSYAYVLMCIHFLQQRR PAILPCLQRMEATYSVTVDDIECSYFDQVEKLHGFGSCNRESIAQLVWGFFYYWAYCHDYANTVVSVRKGSTISKREKDWTRRVGNDRHLICIEDPFEVT HDLGRVVDRFSIRVLREEFERAADVLQHDQNPCVTLFQPYVPLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	0	1
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	1.4	0.8484
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	2.0	0.8851
AT2G45620			Nucleotidyltransferase family ...		Lus10009310 [exp]	5.5	0.8312
AT3G22430			unknown protein		Lus10021918 [exp]	6.2	0.7584
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	6.3	0.8385
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Lus10002652 [exp]	7.3	0.8402
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	8.1	0.8305
AT2G02148			unknown protein		Lus10031926 [exp]	8.5	0.7542
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10004464 [exp]	8.9	0.7298
AT2G02148			unknown protein		Lus10035090 [exp]	9.2	0.7896

Compare expression of checked genes

Lus10009309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.