Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61130 974 / 0 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 725 / 0 GAUT3 galacturonosyltransferase 3 (.1.2) AT5G47780 648 / 0 GAUT4 galacturonosyltransferase 4 (.1) AT2G46480 607 / 0 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G25140 490 / 3e-167 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G18580 457 / 9e-155 GAUT11 galacturonosyltransferase 11 (.1) AT3G02350 441 / 4e-148 GAUT9 galacturonosyltransferase 9 (.1) AT2G20810 433 / 2e-145 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT2G30575 431 / 3e-143 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 413 / 1e-136 GAUT6 galacturonosyltransferase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041389 [exp] 1063 / 0 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 1060 / 0 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 743 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 709 / 0 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038739 [exp] 644 / 0 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10011834 [exp] 493 / 5e-168 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10007979 [exp] 461 / 3e-156 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10018554 [exp] 461 / 5e-156 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10013506 [exp] 459 / 3e-155 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151400 [exp] 1051 / 0 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 1046 / 0 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 728 / 0 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.016G001700 [exp] 644 / 0 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 613 / 0 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 491 / 1e-167 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.004G111000 [exp] 479 / 8e-163 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.017G106800 [exp] 478 / 1e-162 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.015G060800 [exp] 460 / 9e-156 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.005G218900 [exp] 459 / 2e-154 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10009311 pacid=23141881 polypeptide=Lus10009311 locus=Lus10009311.g ID=Lus10009311.BGIv1.0 annot-version=v1.0 ATGGTGCTCCGGCTGGGGTCGTCCACGAGTAGGACCAGCCGTGGCGCTGTTGGCGGATCTCGATTGCCGATCACACTTGTTCTCTTCTTCTCCTTATTAG TGGCCTTAATGTTCTTTGTTGGTCATCGGCTCCGCTCTGTTGCTCCTGTTGATGGAGGAATTCTTCCGATTGTTTCTAGTAAGCAGGTCATTGATGTTAT CACAGCTACTACGGCTGATTTGGGCCCTTTTAGTCTGGATGCATTTAGAAGAGGAAATTTGTCTGCTTCATGGAAACTTGTTGGAGCTGAGACTTCTTTT GATGATGTATCCACTTCTGAGATAAAGGCAACGCAACCAGCTGATACTATCAAGCAAGAAGCGCCAAACAATAAAGGCATGAAGTTGTCTAATGATGAAA CCCAATTCGTCGACTCACCCGCAAAACTCATTCGAAGGCAATTAAGAGAAAAAAGTCGTGAGAAACGTGCAGCTGAGTTGCTTCGACAAGGAGATGAAGC AACTATAAAATTTGAAAATGCAGCTATTGAACGCTCTAAATCAGTGGACTCAGCAGTTCTTGGAAAATACAATTTATGGAGAAAAGAGACTGAGAATGAG AATGTTGATTCAACAGTACGCTTAATTCGGGATCAAATGATAATGGCCAGGGTATATTTAAGCATTGCAAAGATGAAAAACAAGCTTGATTTGCTGAAAG AGCTACTAACTCGGCTTAAAGAGAGTCAGCGTATTGTAGGAGATGCAACAGCTGACTCTGAACTACCGCACAGTGCTCCGGAGAAAATTAAAGCCATGGG GCAGGTTCTGTCAAAAGCCAGGGGAAAGTTATACGACTGTAAGATAGTCACTGGAAAGCTCAGAGCAATGCTCCAGACAGCGGATGAGGAAGTTAGGAGA TTGAAAAAGCAGAGCACATTCCTGAGTCAATTGGCTGCTAAGACAGTTCCTAACGGAATTCATTGCTTGTCTATGCGCTTAACAATAGATTACTATCTCC TGCCTCCAGAGAAGAGAAAGTTCCCACGAAGTGAGAATCTGGAAAATCCAAATTTATTTCACTATGCGCTCTTTTCTGACAATGTCTTAGCTGCATCTGT TGTCGTCAATTCAACTATTGTGAACGCAAAGGATCCTTCCAAACATGTGTTTCACCTCGTAACAGATAAACTGAACTTTGGAGCAATGAATATGTGGTTT CTGTTGAACCCTCCGGGAAAGACCACGATCCATGTTGAAAATGTAGATGAATTTAAGTGGCTTAATTCATCCTACTGCCCAGTTCTCCGTCAGCTGGAGT CTGCTGCAATGAAAGAGTATTACTTTAAGGCAAATCATCCGACTTCTCTCTCATCTGGTGCTTCGAATCTGAAGTATCGAAATCCCAAGTATCTTTCAAT GCTCAATCACCTGAGGTTTTATCTTCCAGAGGTTTATCCCAAGCTGAATAAGATCTTGTTTCTTGACGATGACATTGTTGTCCAAAAAGATCTGACGGGA CTGTGGTCTGTGGATCTGCACGGAAAAGTAAACGGTGCGGTGGAAACATGCGGGGAAAGCTTTCACCGGTTTGATAAGTATCTCAATTTCTCGAATCCTA ACATTGCCAGAAACTTCGATCCGAATGCTTGTGGATGGGCATATGGTATGAATATGTTTGATCTGGAAGAATGGAAAAGGAAGGATATCACTGGTATCTA TCACAAATGGCAAACCATGAATGAGGATAGGGTACTTTGGAAGCTGGGGACACTGCCTCCAGGGTTGATAACATTTTATGGTCTAACCCATCCGCTCGAG AAGTCGTGGCATGTGCTCGGATTGGGTTATAATCCGAGCGTTGACAAGGCGGAGATTGATCGTGCTGCGGTGGTTCATTATAACGGAAACATGAAGCCGT GGCTAGAGTTGGCGATGACAAAGTACAGGCCGTATTGGACAAAGTACATCAAGTATGATCATCCCTATCTCCGCAACTGCAGTCTAACAGAATGA
AA sequence Show only first row Show all	>Lus10009311 pacid=23141881 polypeptide=Lus10009311 locus=Lus10009311.g ID=Lus10009311.BGIv1.0 annot-version=v1.0 MVLRLGSSTSRTSRGAVGGSRLPITLVLFFSLLVALMFFVGHRLRSVAPVDGGILPIVSSKQVIDVITATTADLGPFSLDAFRRGNLSASWKLVGAETSF DDVSTSEIKATQPADTIKQEAPNNKGMKLSNDETQFVDSPAKLIRRQLREKSREKRAAELLRQGDEATIKFENAAIERSKSVDSAVLGKYNLWRKETENE NVDSTVRLIRDQMIMARVYLSIAKMKNKLDLLKELLTRLKESQRIVGDATADSELPHSAPEKIKAMGQVLSKARGKLYDCKIVTGKLRAMLQTADEEVRR LKKQSTFLSQLAAKTVPNGIHCLSMRLTIDYYLLPPEKRKFPRSENLENPNLFHYALFSDNVLAASVVVNSTIVNAKDPSKHVFHLVTDKLNFGAMNMWF LLNPPGKTTIHVENVDEFKWLNSSYCPVLRQLESAAMKEYYFKANHPTSLSSGASNLKYRNPKYLSMLNHLRFYLPEVYPKLNKILFLDDDIVVQKDLTG LWSVDLHGKVNGAVETCGESFHRFDKYLNFSNPNIARNFDPNACGWAYGMNMFDLEEWKRKDITGIYHKWQTMNEDRVLWKLGTLPPGLITFYGLTHPLE KSWHVLGLGYNPSVDKAEIDRAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCSLTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10009311 [exp]	0	1
AT1G04910			O-fucosyltransferase family pr...		Lus10017105 [exp]	2.2	0.8612
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035940 [exp]	6.3	0.8760
AT5G07940			unknown protein		Lus10034693 [exp]	9.4	0.8198
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10021592 [exp]	11.0	0.8347
AT5G06970			Protein of unknown function (D...		Lus10008663 [exp]	12.2	0.8704
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025769 [exp]	14.1	0.8616
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10025764 [exp]	14.9	0.8229
AT5G05520			Outer membrane OMP85 family pr...		Lus10009835 [exp]	15.9	0.8514
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10041277 [exp]	16.7	0.8555
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10040928 [exp]	19.3	0.8483

Compare expression of checked genes

Lus10009311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.