Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45670 634 / 0 calcineurin B subunit-related (.1.2) AT1G80950 124 / 1e-30 Phospholipid/glycerol acyltransferase family protein (.1) AT5G60620 54 / 1e-07 GPAT9 glycerol-3-phosphate acyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015853 [exp] 977 / 0 AT2G45670 672 / 0.0 calcineurin B subunit-related (.1.2) Lus10036544 [exp] 824 / 0 AT2G45670 692 / 0.0 calcineurin B subunit-related (.1.2) Lus10041384 [exp] 764 / 0 AT2G45670 647 / 0.0 calcineurin B subunit-related (.1.2) Lus10003950 [exp] 120 / 3e-29 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032706 [exp] 97 / 1e-21 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1) Lus10014443 [exp] 57 / 3e-08 AT5G60620 617 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10023947 [exp] 56 / 3e-08 AT5G60620 655 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074300 [exp] 736 / 0 AT2G45670 710 / 0.0 calcineurin B subunit-related (.1.2) Potri.002G151800 [exp] 732 / 0 AT2G45670 716 / 0.0 calcineurin B subunit-related (.1.2) Potri.014G042200 [exp] 134 / 3e-34 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1) Potri.002G134100 [exp] 119 / 8e-29 AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1) Potri.009G143200 [exp] 54 / 2e-07 AT5G60620 679 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.004G183300 [exp] 51 / 1e-06 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10009312 pacid=23141892 polypeptide=Lus10009312 locus=Lus10009312.g ID=Lus10009312.BGIv1.0 annot-version=v1.0 ATGTCCGCTCATGATCTCTCTTCCCCGCTCCTCGCTTCTTCTACCCCGCCGCCGCACATCACCATAACCGTTGACGCCTCCGACGGCAACTCATCCTCCC GTCGAACCACCACTAATCATGATCACGCCAGCCAGACCACTTCCAACTACCACATTCGTCACTCTAGCTCCACTAATTTCCGCAATCCTTTCGAATTCCT CTGCTCGGACGCTTCTTCCTTGTCGGTTCCGCAACCGTCAACTGTCGATCCTTTCCGCAACGGAACTCCTCGTATCGACGGGCTATACGAGGTCGTCAAG ATTCTGATCCTTCTTCCCGTCGTGGTTTTGAGACTGCTGCTCTTTGGACTCTGTTTGGCCGTCGGTTATGTAGCTACTAAATTGGCCATTCTTGGATGGA AAGACAAGCACAATCCTATGCCCAGATGGCGCTCTCGGCTGATGTGGATCACTAGATTCTGCACCCGTGGAATTCTCTTTGCTTTCGGGTACCAGTGGAT AAGAAGAAGAGGGAAACCAGCTCCCAGGGATATTGCTCCCATTGTTGTATCCAATCATGTGTCTTACGTCGATCCGATTTTCTATTTCTATGAGATGTGT CCTACAATTGTTGCTTCTGAATCGCATGATGCTTTGCCCTTTGTGGGAACTATCATCAGAGCTATGCAGGTGATATATGTAAATAGGTTTTCGCAACCAT CCAGGAAGAATGCTGTTAATGAGATAAAGAGAAAAGCTTCTTGCGGTAGATTTCCTCGAGTACTGCTGTTTCCTGAAGGAACCACTTCTAATGGAAGAGT TCTTCTTTCCTTTCAACTTGGTGCTTTCATCCCTAATTATGCAATCCAACCTGTGGTCGTCCGCTATCCACATGTTCATTTTGACCAATCCTGGGGAAAT ATTTCTTTGGCGATGCTCATGTTTAGAATGTTCACCCAGTTTCACAATTACTTCGAGGTGGAGTATCTACCAATAGTTTCGCCCCTTGACAATTGCAAAG AAAACCCTACAGAGTTTTCCAAGACAACAAGTACTGCTATGGCATCTGCTTTAAATGTTGTACAAACGTGCCACTCCTATGGGGATGTGATGCTTCTTAT GAGAGCGGCTGAGTCTGGCCAGGAGAATCCTTCACATTTTATGGTTGAAATGGCAAAGGTGGAATTGTTATTCGACATACGCAGTTTGGAAGTCATGGAA TTTCTCGAAAAGTTTATTTCTATGAATCCAGACTCCTGTGGCCGGGTTAAATACTATGACTTTTTGAGGGTTCTTAGACTCAGACCTTGCACACTTACAG AAGAGGTATTTGTGTTCCTTGATGTGGAGAAAAGTGGATCAATTACATTTAAGCAGTTCTTATATGGATCGTTGCACGTCATGAAACAACCTGAATTCCG TAAAGCGTGTGAAATGGCTTTTAGTGAATGTGATATCAGGGGAAAGCATGAAATCTCCGAACACGAGTTGGGAGATGTCATTCGATTAGTAATTCCAAAT TTTGATGGAGATGAGCTAACACATTCCTGTACTCTGGAACAAAACCCCCAGGTTCACGGATTGTTCAAATTGTTTGACACGGAGGGAAAAGGAAAGGTGA GCAAGGATGAGTTCAACTCCTGCTTGAGAAAGAACCCACTCTTGATAGCTCTTTTTTTGGAATGTGTGGCTCGTAGAGATGCGGAAGCAGAAGAAGGCGC TTTAGTATTGGAGGAGATGGTTTGA
AA sequence Show only first row Show all	>Lus10009312 pacid=23141892 polypeptide=Lus10009312 locus=Lus10009312.g ID=Lus10009312.BGIv1.0 annot-version=v1.0 MSAHDLSSPLLASSTPPPHITITVDASDGNSSSRRTTTNHDHASQTTSNYHIRHSSSTNFRNPFEFLCSDASSLSVPQPSTVDPFRNGTPRIDGLYEVVK ILILLPVVVLRLLLFGLCLAVGYVATKLAILGWKDKHNPMPRWRSRLMWITRFCTRGILFAFGYQWIRRRGKPAPRDIAPIVVSNHVSYVDPIFYFYEMC PTIVASESHDALPFVGTIIRAMQVIYVNRFSQPSRKNAVNEIKRKASCGRFPRVLLFPEGTTSNGRVLLSFQLGAFIPNYAIQPVVVRYPHVHFDQSWGN ISLAMLMFRMFTQFHNYFEVEYLPIVSPLDNCKENPTEFSKTTSTAMASALNVVQTCHSYGDVMLLMRAAESGQENPSHFMVEMAKVELLFDIRSLEVME FLEKFISMNPDSCGRVKYYDFLRVLRLRPCTLTEEVFVFLDVEKSGSITFKQFLYGSLHVMKQPEFRKACEMAFSECDIRGKHEISEHELGDVIRLVIPN FDGDELTHSCTLEQNPQVHGLFKLFDTEGKGKVSKDEFNSCLRKNPLLIALFLECVARRDAEAEEGALVLEEMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45670			calcineurin B subunit-related ...		Lus10009312 [exp]	0	1
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	2.4	0.8982
AT1G17820			Putative integral membrane pro...		Lus10040647 [exp]	3.7	0.8948
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	5.5	0.8701
AT3G63340			Protein phosphatase 2C family ...		Lus10014699 [exp]	5.7	0.8782
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Lus10034999 [exp]	5.7	0.8626
AT5G48940			Leucine-rich repeat transmembr...		Lus10028612 [exp]	8.7	0.8705
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041248 [exp]	8.9	0.8739
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10030793 [exp]	10.2	0.8666
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10022236 [exp]	10.6	0.8672
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10017377 [exp]	11.5	0.8599

Compare expression of checked genes

Lus10009312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.