Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00230 907 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G03620 630 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59100 534 / 2e-180 Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 533 / 3e-180 ATSBT4.13 subtilase 4.13 (.1) AT5G59190 528 / 5e-179 subtilase family protein (.1) AT5G59090 522 / 4e-176 ATSBT4.12 subtilase 4.12 (.1.2.3) AT3G46850 514 / 6e-173 Subtilase family protein (.1) AT2G04160 506 / 3e-169 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G58840 503 / 8e-169 Subtilase family protein (.1) AT5G59810 502 / 1e-167 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009867 [exp] 617 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10020582 [exp] 607 / 0 AT5G03620 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004685 [exp] 596 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10040253 [exp] 587 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10009868 [exp] 584 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 563 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10020581 [exp] 561 / 0 AT5G03620 653 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002964 [exp] 550 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004682 [exp] 540 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151900 [exp] 1084 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.014G074500 [exp] 856 / 0 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 657 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 606 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 605 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G145600 [exp] 592 / 0 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 568 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 565 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.009G038001 [exp] 544 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 541 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10009313 pacid=23141842 polypeptide=Lus10009313 locus=Lus10009313.g ID=Lus10009313.BGIv1.0 annot-version=v1.0 ATGAAGATATCCACCTTGGCCCTTGTTCTACTTTCATTCTTGATCACTCTTGCTGCTTCTTCTGCTGCTGATTTTGATGATGATCAGAAGGTCTGCGCGA TTCTTAACGACGTTACTGAATTCCACATTGTTTATCTGGGAGAAAAACCTAACAAGAACGGCTTCTCAGCAGTGAAACAACAACATATGGATGTCTTGTC TTCTGTCAAGAGAAGCGGTGACGATGCTACGGAGGCGATGGTCTACAGCTACACCAAGACCTCTTTCAATGCATTCGCTGCAAAACTGACCCCAGCCGAA GTTGAAAAGCTGTCAAAACATGGGGAAGTCCTTGGTGTTTTCCGAAACCGATATCACAAGCTTGACACGACAAAATCATGGGACTTCCTCGGACTTCCCA AGACAGCAAAGAGGAATCTGAAAATGGAGAACAACATAATTGTTGGTCTGCTGGATACAGGCATCACCCCACAGTCTATCAGCTTCAAAGATTATGGCTT TGGTCCTCCACCAAAGAAATGGAAAGGCACTTGTGGCCACTTCGCCAATTTCTCAGGATGCAACAACAAGATAGTAGGAGCTAGATACTTCAAGCTAGAT GGAAATCCAGACCCCGTTGACATTTTATCACCAATAGATGTAGATGGACACGGCACGCACACATCATCGACACTAGCGGGGAACGTGGTCCCAAACGCAA GCCTATTCGGGCTAGCCAAAGGCTCAGCTCGTGGTGCAGTGCCGGATGCCAGGATTGCGGTGTACAAGGTCTGTTGGGTGAGCTCTGGGTGCTCGGATAT GGACTTGCTTGCTGCATTTGAAGCTGCTATCCATGATGGTGTCGATGTCATATCTATCTCGATAGGTGGTGCGGGTTCCGACTATGTATCCGATGCCTTG GCAATCGGCGCGTTTCATGCCACCAAGAATGGGATCCTAACGGTGGCATCGGCAGGGAACGATGGACCTAATGCAGCTTCCGTCAGGAACCATGCTCCGT GGATGTTGACCGTTGCAGCCAGTGGCATTGATAGAACTTTTAGAAGCAAAGTCCATCTGGGGAACGGCAAGCTTGTCTCTGGAACTGGGGTTAGCCTTTT TGAGCCAAAACAGAAGCTTTACCCGCTAGTGAGTGGATTTGATGCAGCCATTGACGATGACAGCAAGGAGACTGCAAGATTCTGCATTGACGGATCACTG GACAGAAAAAAGGTCAAAGGGAAGCTTGTTTACTGCAAGTTAGGACTGTGGGGAGCTGATTCAGTTGTGAAAGGGCTTGGAGGTGCAGGTGCCATTGTAG AGAGTGAGCAATTTCTTGATATTGCCCAGATCTTCATGGCACCAGCCACCATGGTAAATTCCTCTGTTGGAAAAATGATTGACAGTTACATACATTCCAC AAGATCCCCAAGTGCTGTGATATTTCAGTCCCAAGAAGGGAAAGTTGCTGCTCCGTTTGTTGCATCGTTCTCGTCTCGTGGTCCGAATTCAGGATCGACT CGCATACTCAAGCCGGATATAGCAGCACCAGGGATTGACATATTAGCAGCATTCACGCCATTGAAGACACTCACAGGACTACAAGGAGACACACAACACT CAGCATTCACTCTCATGTCCGGAACATCCATGGCTTGTCCTCACGTCGCTGGAGCCGCCGCCTATGTCAAATCTTTCCACCCCAACTGGAGTCCAGCAGC CATCAAATCGGCCATCCTAACTACAGCAAAACCAATGAGGAACGAGGACGATGCCGAGTTTGCATACGGAGCCGGACAACTGAATCCGACCATGGCACGG AGTCCAGGTCTAGTGTACGACATGGACGAAATGTCGTACGTACAGTTCCTATGCCACGAAGGCTACAAAGGGTCATCACTATCGGTCCTGGTGGGATCGA AATCCGTAAACTGCTCGTCCATGATTCCAGGGACGATCACAGGCTACGATGCTCTGAACTATCCAACCATCCAGATGAGAGGCGGGAGCAAATCGACTGC GGGAGTTTTCCAGCGGAGGGTCACGAATGTTGGACCGTATCCGATTGTTTATAATGCCACGATACGATCCCCGAAAGGAGTGGAGATCACGGTGAAACCA ATGTCTCTGTCTTTCTCGCGTGCCAACGAGGAGAAGAGCTTCATAGTTGTGGTGAAGGCAGAGCCTATAAAGGGGTATTCTGGGATTTTGTCTGGGGAAA TTGTGTGGAAGAGTCGTGGTTATAGGGTGAGGAGTCCTGTCGTGGTTTATAAACAGCTGGACTGA
AA sequence Show only first row Show all	>Lus10009313 pacid=23141842 polypeptide=Lus10009313 locus=Lus10009313.g ID=Lus10009313.BGIv1.0 annot-version=v1.0 MKISTLALVLLSFLITLAASSAADFDDDQKVCAILNDVTEFHIVYLGEKPNKNGFSAVKQQHMDVLSSVKRSGDDATEAMVYSYTKTSFNAFAAKLTPAE VEKLSKHGEVLGVFRNRYHKLDTTKSWDFLGLPKTAKRNLKMENNIIVGLLDTGITPQSISFKDYGFGPPPKKWKGTCGHFANFSGCNNKIVGARYFKLD GNPDPVDILSPIDVDGHGTHTSSTLAGNVVPNASLFGLAKGSARGAVPDARIAVYKVCWVSSGCSDMDLLAAFEAAIHDGVDVISISIGGAGSDYVSDAL AIGAFHATKNGILTVASAGNDGPNAASVRNHAPWMLTVAASGIDRTFRSKVHLGNGKLVSGTGVSLFEPKQKLYPLVSGFDAAIDDDSKETARFCIDGSL DRKKVKGKLVYCKLGLWGADSVVKGLGGAGAIVESEQFLDIAQIFMAPATMVNSSVGKMIDSYIHSTRSPSAVIFQSQEGKVAAPFVASFSSRGPNSGST RILKPDIAAPGIDILAAFTPLKTLTGLQGDTQHSAFTLMSGTSMACPHVAGAAAYVKSFHPNWSPAAIKSAILTTAKPMRNEDDAEFAYGAGQLNPTMAR SPGLVYDMDEMSYVQFLCHEGYKGSSLSVLVGSKSVNCSSMIPGTITGYDALNYPTIQMRGGSKSTAGVFQRRVTNVGPYPIVYNATIRSPKGVEITVKP MSLSFSRANEEKSFIVVVKAEPIKGYSGILSGEIVWKSRGYRVRSPVVVYKQLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	0	1
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028243 [exp]	1.0	0.9924
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	2.4	0.9824
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	2.8	0.9831
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	4.0	0.9797
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	6.3	0.9639
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10000926 [exp]	7.3	0.9181
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010437 [exp]	7.7	0.9612
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	8.1	0.9659
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	8.1	0.9742
AT4G03230			S-locus lectin protein kinase ...		Lus10031603 [exp]	8.5	0.9330

Compare expression of checked genes

Lus10009313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.