Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22990 871 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT4G11810 865 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT1G63010 836 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein AT5G20150 55 / 7e-08 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT5G15330 50 / 3e-06 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT2G26660 49 / 7e-06 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT2G45130 46 / 5e-05 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015852 [exp] 1205 / 0 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10006340 [exp] 853 / 0 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10002956 [exp] 621 / 0 AT4G22990 797 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10030095 [exp] 56 / 3e-08 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002908 [exp] 56 / 3e-08 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10002018 [exp] 56 / 5e-08 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10043272 [exp] 55 / 1e-07 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 53 / 5e-07 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G078000 [exp] 969 / 0 AT4G22990 978 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.003G120600 [exp] 912 / 0 AT4G22990 1112 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.001G111400 [exp] 905 / 0 AT4G22990 1087 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.002G143900 [exp] 62 / 2e-10 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G061400 [exp] 59 / 2e-09 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.018G131500 [exp] 56 / 3e-08 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 52 / 6e-07 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.006G069500 [exp] 50 / 3e-06 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.001G193200 [exp] 44 / 9e-05 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.017G086600 [exp] 44 / 0.0003 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] PF03105 [flax] [poplar] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Lus10009314 pacid=23141852 polypeptide=Lus10009314 locus=Lus10009314.g ID=Lus10009314.BGIv1.0 annot-version=v1.0 ATGGTTACTTTTGGGAAGAAGTTGAAAGAAGCCCAAATTCAAGAATGGCAGGGGCACTACATAAACTACAAGCTCCTGAAGAAGAGAGTTAACAGATACA CACAGCAGCTTCAATCCGGGACCCGAGACCAACAGTCCGTTCTCAAGGACTTCTCCCGATTGCTCGACTCCCAGATTGAGAGGATAGTGATGTTTATGCT TGAAAAGCAAGGAGGACTGGCAGCGAGGCTAGCAAGTCTAGCAGATCAGCAAGAGGAAGAATGTTGCCGTCTCTTACAGCAACAACATGCATCATCAAGT GGGTCGTACAGAGCTGAGCTGAGGGAATCCTACAGAGATGTCGGGGTGGAGCTACTGAGGCTGCTCAATTTCGTCGAGATGAACGCCATTGGGTTGCGGA AGATCCTGAAGAAGTTCGACAAGCGGTTCGGGTCTAGTTTCACTGATTACTACGTCAAGACTCGCTCCAATCATCCTTATTCCCAGCTTCGTTCCGTCTT CAAGCAAGTGGGAGTTGGAGCTGTTGTTGGAGCAATTTCTCGGAATCTTGCACAACTTGAAGGGAACGACTGCACATCCATATATGACCACCCGGAACAC TCTCATCCGGACCCAGTGATCGATTCAATCAAAGCAGCCGTGAACAGGCTATCGAATTCTACAAGTTTCCTGGAGTTTCTGGGGAAGCATTCTTTCATTT TCCAGCAGGAAGACATCGTCCGAGACCATCCATCTGATGACGAACAGTTCGTTGAGGAGAGATATAACTTGGTGTCACTTCTCCTTAACTTGGTCAACAC GTTTCTATACATGGTCAATACCTACATCATAGTCCCAACGGCGGATAACTACTCGCTAACACTCGGAGCTGCAGCGACCGTCTGTGGTGTCGTCATAGGG TCAATGGCGATTGCCCAGATATTCTCTTCGGTATACTTCAGTGCTTGGTCCAACAGATCGTATTTCAGACCACTCGTGTTCAGCAGCATTGTGCTTGTTG TTGGGAACACCATGTATGCTCTGGCTTATGATCTCAACTCCATTTCGATCCTTCTCATTGGCCGCCTTTTCTGCGGGTTAGGTTCAGCGAGAGCGGTTAA TAGGCGGTACATAAGCGACTGTGTGCCTCTGAAATTCCGGATGCAGGCTTCAGCAGGGTTTGTAAGTGCAAGTGCTCTTGGAATGGCTTCTGGTCCAGCT CTTGCTTGCTTATTTCAGACTAACTTCAAAATCTACAATCTTACATTCAATGAGGCAACTTTGCCTGGCTGGTTCATGGCTTCCCTTTGGCTTCTCTACC TATTGTTGCTCTGGTTTTCGTTTCGAGAACCGCCACCTCCAGTCTCGAGTTCGCTCGTGGCTCAACAATCTAATGCCAATAAGCATGGGCCGTTAGGGAA TATTGATGGTGTAGAGAATGGTTCATCGCAGCCGCTGCTCTTGGAATCAGAAGCTAAGTATCGAGATGAAGACGAAGATCAAGAGATCGAAGATGGTGAA GGAGATTCATCACAGGCAAGTCATGAACCTGTCACCTCAATCATTTCAGCATATCAGTTGCTTACCCCATCTGTAAAGGTCCAACTATTCGTTTACTTCA TGCTCAAATACGCGATGGAGATTCTACTAGCCGAATCGAGCCTGATCACCGGATACTACTTCATTTGGTCAACTCGTAGCGTCGCCATATTCCTAGCCTG TCTCGGACTAACAGTCTTACCTGTCAATGTCATCGTCGGAAGCTACATCAGCAATATCTTTGAAGAGAGGCAAGTTCTACTGGCATCTGAGATCATGGTA TGCATAGGCATACTCTTAAGCTTCCACGTCTTAATCCCTTATTCCGCAGCACAATATGTCAGCTCAGCGCTCATCACGTTCGTCTCTGCCGAAGTCTTGG AAGGTGTGAACTTGTCGCTACTCTCTCGGGGGATGTCATCGAGGCTTTCGAAAGGAACATTCAACGGAGGTCTGCTTTCGACAGAAGCCGGGACGATAGC TCGTGTGATTGCAGATGGAACCATAACATTGTCTGGATACCTTGAGGAGAATATGCTGCTAAATGTCACCCTGCTTCCTTCACTGTTTATTTGTATCTCT TCCATCGTTGCCACTTGTGTAACTTACAACTCCCTCTACTAA
AA sequence Show only first row Show all	>Lus10009314 pacid=23141852 polypeptide=Lus10009314 locus=Lus10009314.g ID=Lus10009314.BGIv1.0 annot-version=v1.0 MVTFGKKLKEAQIQEWQGHYINYKLLKKRVNRYTQQLQSGTRDQQSVLKDFSRLLDSQIERIVMFMLEKQGGLAARLASLADQQEEECCRLLQQQHASSS GSYRAELRESYRDVGVELLRLLNFVEMNAIGLRKILKKFDKRFGSSFTDYYVKTRSNHPYSQLRSVFKQVGVGAVVGAISRNLAQLEGNDCTSIYDHPEH SHPDPVIDSIKAAVNRLSNSTSFLEFLGKHSFIFQQEDIVRDHPSDDEQFVEERYNLVSLLLNLVNTFLYMVNTYIIVPTADNYSLTLGAAATVCGVVIG SMAIAQIFSSVYFSAWSNRSYFRPLVFSSIVLVVGNTMYALAYDLNSISILLIGRLFCGLGSARAVNRRYISDCVPLKFRMQASAGFVSASALGMASGPA LACLFQTNFKIYNLTFNEATLPGWFMASLWLLYLLLLWFSFREPPPPVSSSLVAQQSNANKHGPLGNIDGVENGSSQPLLLESEAKYRDEDEDQEIEDGE GDSSQASHEPVTSIISAYQLLTPSVKVQLFVYFMLKYAMEILLAESSLITGYYFIWSTRSVAIFLACLGLTVLPVNVIVGSYISNIFEERQVLLASEIMV CIGILLSFHVLIPYSAAQYVSSALITFVSAEVLEGVNLSLLSRGMSSRLSKGTFNGGLLSTEAGTIARVIADGTITLSGYLEENMLLNVTLLPSLFICIS SIVATCVTYNSLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22990			Major Facilitator Superfamily ...		Lus10009314 [exp]	0	1
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011722 [exp]	3.5	0.8586
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	3.9	0.8731
AT2G39530			Uncharacterised protein family...		Lus10031305 [exp]	4.5	0.8457
					Lus10000914 [exp]	5.0	0.8457
					Lus10003607 [exp]	5.2	0.8278
AT5G66440			unknown protein		Lus10023551 [exp]	5.3	0.8657
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10036966 [exp]	5.5	0.8417
AT4G25350		SHB1	SHORT HYPOCOTYL UNDER BLUE1, E...		Lus10037146 [exp]	6.3	0.8357
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10033912 [exp]	10.2	0.6770
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10037471 [exp]	12.5	0.8122

Compare expression of checked genes

Lus10009314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.