Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12600 523 / 0 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT4G23010 520 / 0 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3) AT2G02810 74 / 1e-14 ATUTR1, UTR1 UDP-galactose transporter 1 (.1) AT1G14360 69 / 6e-13 ATUTR3, UTR3 UDP-galactose transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006337 [exp] 553 / 0 AT1G12600 555 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10029605 [exp] 553 / 0 AT1G12600 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10015850 [exp] 516 / 0 AT1G12600 484 / 1e-173 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10030495 [exp] 76 / 5e-15 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1) Lus10005881 [exp] 67 / 3e-12 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10012848 [exp] 52 / 3e-07 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077500 [exp] 579 / 0 AT1G12600 566 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.001G111000 [exp] 548 / 0 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.003G121000 [exp] 545 / 0 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.016G139100 [exp] 65 / 2e-11 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1) Potri.006G110500 [exp] 62 / 1e-10 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1) Potri.008G209501 [exp] 42 / 2e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10009315 pacid=23141872 polypeptide=Lus10009315 locus=Lus10009315.g ID=Lus10009315.BGIv1.0 annot-version=v1.0 ATGAAGAATGACCAGCAAGCTCGGTCTCTCTTCGGGATTTCTCTCACTGACCGACCTAGATGGCAGCAGTTCCTCATCTGCTCTTCTGGGTTTTTCTTCG GCTACCTTGTCAACGGCGTTTGCGAGGAATATGTGTATAACAGGCTTCAGTTTAGCTACGGGTGGTACTTCACATTTGTGCAGAGTTTTGTGTATGTTCT GTTGATTTACATCCAAGGGTTCACACCAAAGCAAATGGTGAACCCATGGAAGACTTATGTCAAGCTCTCTGCTGTTCTCATGGGCTCCCATGGACTCACC AAGGGTTCTCTTGCTTTCCTCAATTACCCTGCTCAGATCATGTTCAAATCCACCAAGGTTTTGCCAGTAATGGTGATGGGTGCATTCATACCAGGACTGA GGAGGAAATACCCAGCACACGAATACATATCAGCACTGCTTTTGGTGGTGGGGCTAATCCTATTCACATTAGCAGATGCAAAGACATCTCCTAACTTCAG CGTTATTGGCGTTGTCATGATCTCTGGTGCTCTGGTGATGGATTCCTTTCTAGGGAACTTGCAAGAAGCTATCTTCACCATGAATCCTGAAACCACCCAG ATGGAGATGCTCTTCTGCTCAAGTATAGTGGGCCTCCCCTTCTTGATCCCACCAATGATTTTGACCGGAGAACTCTTCAGAGCTTGGACTTCATGTTCCC AGCACCCTTACGTGTATGGTGTACTGGTGTTTGAAGCCATGGCCACATTTATTGGCCAAGTCTCAGTGCTATCGCTCATTGCTCTGTTCGGTGCTGCCAC TACTGCCATGATAACAACGGCTAGGAAGGCAGTGACATTACTGCTATCGTACTTGATATTCACCAAGCCGTTGACAGAGCAACATGGGACTGGACTACTA CTGATTGCCATGGGGATTACTCTTAAGCTGTTGCCTGACCAGCAGATTCCCAGTCCGAGTTACAAGAAGATTTCTTCGTCGTCTTCGGTAGCTTCGTCTC GAACCCACGACAAGATTGAGATGGAAGATGTTGAAGAAAGAGGTGGGAGTAAAGAGAAGAGGCCTTTGGTTTGA
AA sequence Show only first row Show all	>Lus10009315 pacid=23141872 polypeptide=Lus10009315 locus=Lus10009315.g ID=Lus10009315.BGIv1.0 annot-version=v1.0 MKNDQQARSLFGISLTDRPRWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFVQSFVYVLLIYIQGFTPKQMVNPWKTYVKLSAVLMGSHGLT KGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPAHEYISALLLVVGLILFTLADAKTSPNFSVIGVVMISGALVMDSFLGNLQEAIFTMNPETTQ MEMLFCSSIVGLPFLIPPMILTGELFRAWTSCSQHPYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGTGLL LIAMGITLKLLPDQQIPSPSYKKISSSSSVASSRTHDKIEMEDVEERGGSKEKRPLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10009315 [exp]	0	1
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10028930 [exp]	1.0	0.8962
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10020888 [exp]	4.2	0.8627
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	18.7	0.8373
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10030560 [exp]	18.9	0.7657
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10015850 [exp]	23.2	0.8027
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	25.5	0.8412
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10014768 [exp]	26.2	0.8249
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10030269 [exp]	27.6	0.8293
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	29.4	0.8437
					Lus10030682 [exp]	30.9	0.8317

Compare expression of checked genes

Lus10009315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.