Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35470 195 / 4e-58 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 170 / 9e-49 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09250 114 / 1e-28 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09310 114 / 2e-28 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 114 / 2e-28 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT2G22010 53 / 2e-07 RKP related to KPC1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009451 [exp] 193 / 8e-57 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009445 [exp] 181 / 2e-54 AT1G35470 188 / 4e-56 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10001544 [exp] 185 / 9e-54 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020190 [exp] 179 / 1e-53 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009317 [exp] 138 / 2e-39 ND / Lus10006084 [exp] 117 / 7e-29 AT1G35470 101 / 7e-23 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10002729 [exp] 84 / 1e-19 AT1G35470 81 / 8e-19 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020191 [exp] 85 / 8e-19 AT1G35470 69 / 2e-13 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10008254 [exp] 70 / 7e-13 AT1G35470 309 / 3e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080800 [exp] 189 / 5e-56 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.013G108400 [exp] 184 / 1e-53 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.005G083800 [exp] 53 / 3e-07 AT2G22010 1726 / 0.0 related to KPC1 (.1.2) Potri.007G081900 [exp] 49 / 6e-06 AT2G22010 1712 / 0.0 related to KPC1 (.1.2) Potri.014G025000 [exp] 45 / 6e-05 AT4G06536 173 / 6e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Potri.001G256000 [exp] 44 / 0.0002 AT1G51450 417 / 4e-142 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1) Potri.002G123800 [exp] 42 / 0.0005 AT4G06536 174 / 3e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00622 [flax] [poplar] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Lus10009316 pacid=23141874 polypeptide=Lus10009316 locus=Lus10009316.g ID=Lus10009316.BGIv1.0 annot-version=v1.0 ATGAGCATCTCAACAAGGTTGGAAATGCCCACAAAGCTTGGTGCCGCCTCAAGGTGCACCAAAGTTTCGTCGGACAAGCTTTCTGTTAAGTACCACAATG CGATTGTGGGCAATAGAGATGCCGGAGCTGTTCAGGCGAACAAGCCAGCACCAGAGGTTAAGGGAGCGGTGTACTACTTCGAGATTCGGGTGAATAATGC CGGAGAAAATGGGACCATCGGGATCGGGTTCACAAAGGAAGACTCCGACTTGACGGCCATGCCCGGATGGCGACCCGAAACTATTGGATATCATGGTGAC GATGGATGCATTTTCGAAAGTCGAGGGAAGGGTGAACCGTTTGGTAAAAAATTCACAACCGATGACATAGTTGGGGCTGGTATTGACTATGCTTCAAATC AGTTTTATTTCACTAAGAACGGAGAGCTGGTTGGTGCATTGACCAAGAAAATCAATGGTCCACTATTTCCTACCATCGGCCTTCATAGCCCGGGCGAGGA AGTGGACGTTAATTTTGGACATAAGCCATTTGTACACGATATCAAGCGACCGATGATTACTTACGGTCATCATCTTGAGGTTCAGGATTCGAAATCCTCT ACGATATACAACGAAAGCTGGAAAAAGCTTCTCGAAGAAAAAGACCGGCTTTTGGAAGAGAAGGACACGCTAATGAAGAAGAGCGAATCATTGATGCAGA AATCTCTCGAAGAGAAGGACCAGCTCTTGTTAAAGAAGGACCAGCTCTTGGCAGAGAAGGAGAAGCTAATGGAGAACAGCGAATCGTTGATGAAGAAGTC TCTCGAAGAGAAGGACCAACTCTTGGCAGAGAAGGATCGAGTTTTGGCAGAGAAGGACAGGCTAATGTCGAAGAGCGAATCGTTGATGACGAAATCCCTC GAAGAGAAGGACCAACTGTTGGCAGAGAAGGACCAGCTTTTGGCCGAGAAGAACAAGCTTATGGACAAGAGTGAATTGTTAACGAGGAAGTCATATGATG AGAAGAGTGTCTTCAAAGGTTTCCTTGCAGTGTGTTGCGTTGGCGTTTTGGTTACATTGTATATCCACAAGTCAACAAGCAACCAATTCGCTGAAATGTG A
AA sequence Show only first row Show all	>Lus10009316 pacid=23141874 polypeptide=Lus10009316 locus=Lus10009316.g ID=Lus10009316.BGIv1.0 annot-version=v1.0 MSISTRLEMPTKLGAASRCTKVSSDKLSVKYHNAIVGNRDAGAVQANKPAPEVKGAVYYFEIRVNNAGENGTIGIGFTKEDSDLTAMPGWRPETIGYHGD DGCIFESRGKGEPFGKKFTTDDIVGAGIDYASNQFYFTKNGELVGALTKKINGPLFPTIGLHSPGEEVDVNFGHKPFVHDIKRPMITYGHHLEVQDSKSS TIYNESWKKLLEEKDRLLEEKDTLMKKSESLMQKSLEEKDQLLLKKDQLLAEKEKLMENSESLMKKSLEEKDQLLAEKDRVLAEKDRLMSKSESLMTKSL EEKDQLLAEKDQLLAEKNKLMDKSELLTRKSYDEKSVFKGFLAVCCVGVLVTLYIHKSTSNQFAEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009316 [exp]	0	1
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	1.0	0.9901
AT3G18260			Reticulon family protein (.1)		Lus10032451 [exp]	2.0	0.9854
AT1G13920			Remorin family protein (.1)		Lus10026649 [exp]	2.4	0.9810
AT1G54400			HSP20-like chaperones superfam...		Lus10032902 [exp]	2.8	0.9769
AT5G18970			AWPM-19-like family protein (....		Lus10041238 [exp]	3.2	0.9750
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10031386 [exp]	4.9	0.9731
AT1G13920			Remorin family protein (.1)		Lus10036964 [exp]	5.6	0.9305
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10035654 [exp]	5.7	0.9605
					Lus10037173 [exp]	5.7	0.9647
AT1G13920			Remorin family protein (.1)		Lus10037111 [exp]	5.7	0.9693

Compare expression of checked genes

Lus10009316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.