Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015849 [exp] 359 / 1e-122 ND 41 / 0.001 Lus10029604 [exp] 45 / 0.0001 AT4G23020 114 / 4e-27 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009318 pacid=23141856 polypeptide=Lus10009318 locus=Lus10009318.g ID=Lus10009318.BGIv1.0 annot-version=v1.0 ATGGGTCACTGTGAGACCTTTAGACGTCCTAATCCTCCCCGACTGCTAAAAGATTTACTCCGTGAGGATTCCATTTCCACCCACTACTCCAAACCTCCTC AAACCAAAAAACTTATTATTCCTGGGCTACTTCGAAACATGGTCAATCTTGCCCTCAAAACCATGAAAAACTCACCCTCTGTATTACACAGAAGCCTTTC TTGCAGCACGGGTACTCCTGCTTCGCCAAAATTACTGGCCAAGTCATCGGCAAAAGAAGTGAACGTCACCGTCAAAGACATTATACGGTGGAAATCCTTC CGCGACCTTCAGGAGGAGGAGGCAGCGGAGGAGACGACGTCGGCGACCAGCGAATGTAGCAGCAGCAGCCAGAGCAGCGGGAGTAAGGGATCCAGCTGGT GCGAGAGCGATTTCAGCTCTGAATGGTGGTGGTGTCAACCTGAAATACTAGTATCTCAGGATTTGGGTCACTGTAAAAAGTCGATCTTGTTGTTACCGCC GCCGACACCAGGCACGGCCGGAGGAGAAAACGACAATAGTGAGGACGAGCAAAAGCAGCACAAGAATCCGTTCCAAACACGCGTGTTCCAATCCGAACAA GAAGAAGATGATTCGTATTCAAACTCGGACGGAAGCTTGACCAACTCAGAGAGCCCATCATCATCGACAGGTGACAGCGAATCGGAAGGAAACGACATCG TCGTTGGTGGTTACGAAGGAGTTTTTGCCAAGGCATGGGAGCTGCTTGAACAAGTGATGAAGTCCAGTAGTGGAAAGGCAATGAAGGGGGAGGAGGAGGA GGAGGAGGAGTTGTTGTTGGATTTCTTCACGGATGAGTTGATCATCATTAACAGGAGAGATGATGACTGTAAACCACGAGATGAAATGATGATTGTGAAG GAAGCACTGGACTGGGTTAACAGTAATAAGACTGGTACCAGTGATAATATGTGGGGATCAGGGTTAGAAAGGAAGAACGATGGTTATGTTAAGGCCATGG ATGAGGAAGGGCATTGGGGTAATTTTGGAGGAGGGAATGAAGTGGGTTTAGAGGTTGAGGCTGGAATCTTTGGCGATCTCATTACTGAGTTGTTGCTTGA TATTTCTTAA
AA sequence Show only first row Show all	>Lus10009318 pacid=23141856 polypeptide=Lus10009318 locus=Lus10009318.g ID=Lus10009318.BGIv1.0 annot-version=v1.0 MGHCETFRRPNPPRLLKDLLREDSISTHYSKPPQTKKLIIPGLLRNMVNLALKTMKNSPSVLHRSLSCSTGTPASPKLLAKSSAKEVNVTVKDIIRWKSF RDLQEEEAAEETTSATSECSSSSQSSGSKGSSWCESDFSSEWWWCQPEILVSQDLGHCKKSILLLPPPTPGTAGGENDNSEDEQKQHKNPFQTRVFQSEQ EEDDSYSNSDGSLTNSESPSSSTGDSESEGNDIVVGGYEGVFAKAWELLEQVMKSSSGKAMKGEEEEEEELLLDFFTDELIIINRRDDDCKPRDEMMIVK EALDWVNSNKTGTSDNMWGSGLERKNDGYVKAMDEEGHWGNFGGGNEVGLEVEAGIFGDLITELLLDIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00770			unknown protein		Lus10009318 [exp]	0	1
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	9.4	0.7099
AT1G74940			Protein of unknown function (D...		Lus10027642 [exp]	14.4	0.7144
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10027207 [exp]	22.7	0.7067
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10017521 [exp]	27.9	0.7098
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10005620 [exp]	30.8	0.6897
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	38.7	0.6940
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	46.5	0.6483
AT5G42670			Agenet domain-containing prote...		Lus10011444 [exp]	47.0	0.6812
AT2G36320			A20/AN1-like zinc finger famil...		Lus10035603 [exp]	58.8	0.6848
AT2G34930			disease resistance family prot...		Lus10039522 [exp]	70.2	0.6163

Compare expression of checked genes

Lus10009318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.