Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01860 419 / 7e-138 PFC1 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) AT5G64170 142 / 3e-35 dentin sialophosphoprotein-related (.1.2) AT5G45670 124 / 2e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 117 / 6e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G66360 112 / 4e-26 DIM1B adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) AT1G29670 110 / 1e-25 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 108 / 5e-25 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G47420 104 / 1e-23 DIM1A adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) AT2G19050 101 / 8e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 100 / 1e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015846 [exp] 976 / 0 AT5G64170 225 / 8e-66 dentin sialophosphoprotein-related (.1.2) Lus10015847 [exp] 309 / 3e-98 AT1G01860 216 / 6e-70 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10015842 [exp] 199 / 4e-56 AT5G45670 325 / 7e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 122 / 1e-29 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 121 / 2e-29 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10010762 [exp] 114 / 9e-29 AT5G45670 129 / 1e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 112 / 4e-26 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005413 [exp] 110 / 9e-26 AT1G29670 399 / 3e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 109 / 4e-25 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077100 [exp] 472 / 2e-158 AT1G01860 437 / 1e-154 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Potri.001G205800 [exp] 443 / 3e-142 AT5G64170 334 / 6e-106 dentin sialophosphoprotein-related (.1.2) Potri.019G008000 [exp] 124 / 2e-30 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008904 [exp] 120 / 3e-30 AT4G18970 246 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G008100 [exp] 121 / 1e-29 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 121 / 2e-29 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 121 / 2e-29 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 121 / 2e-29 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 120 / 3e-29 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 119 / 1e-28 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00398 [flax] [poplar] RrnaAD Ribosomal RNA adenine dimethylase
Representative CDS sequence Show only first row Show all	>Lus10009319 pacid=23141891 polypeptide=Lus10009319 locus=Lus10009319.g ID=Lus10009319.BGIv1.0 annot-version=v1.0 ATGAGGAGCTGGGCGCCTCCTACTCACCTGCAGTTATGCCTGCAACCACCTCCGCCGGAGATTCCCCGGTGGATCAAGAGGCCGAAGTCCTGGTTACCGG CGTTCGGGAATGGAGCCAGTTGCGCTAGAAGCAAACGGCTGGACGCGAGATGCGCCCGCACTTCACAGAAGAGCCCTGACGACTATCACGCCACTCTTAG AGCTCTCAATTCCAGAGGCCGTAAGCCGAGGAAGTCACTTGGCCAGCACTACATGTTGAACAATGAGATCAACGACCAACTAGTTGCTGCTGCCAACGTC GGGGAAGGAGATGTAGTTCTGGAAATTGGACCTGGGACTGGTTCCTTGACTAACGTCCTCATTTCCTCCGGCGCCACCGTCCTCGCCGTCGAGAAAGATC CTTACATGGCTGGTCTGGTGAAAGAAAGATTTGCAGACACTGGGCGTTTGAAGGTTGTGGAAGAAGACTTCGTCAAATGTAACATTGGTTCCCACATTTC ATTGCTCCTGGAAAGTTTAAGCGCTACAGGTGACAGACCCCGATTTGCAAAAGTGGTTGCTAATATACCGTTCAATATAAGCAAGGATGTAGTCAAGCAG CTGCTTCCCATGGGTGACATATTTTCAGAAGTTGTTCTTTTACTGCAGGAAGAAACAGCAGTGCGATTGACGGAATCATCAATACGAACAACAGATTACC GACCTATCAATCTCCTGGTTAATTTTTATTCAGAACCGGAGTACAAACTTAAAGTTCCAAGGTCAAATTTCTTCCCTCAACCTAATGTTGATGCAGCAGT TGTTACCTTTAAGCTCAAGCAATCTGTAGATTATCCAGCAGTTGATTCTTTCAAAAGTTTCTTCTCTACGGTGAATTCTGCATTCAACGGCAAGAGGAAG ATGTTACGGAATACACTTCGGCACATCTGCACCTCCACGGAGATCGAAACAGCTCTTGTGCATGTTGGTCTATCGGCTAGTTCGAGGCCAGAGGAACTTA GCTTGGACGATTTTGTAAAATTGCATAACTTTCTCCTTGACGATAACGTTTGGGATGAGTTCAGTGAGAGTGATGACCACATCGTACCTCGTCCCAGCGA CCAATATAGTAATCCATATGGTAGCAGTAAGAGACCTCGGCATGAAGTAGCAGACTGTGAATTTGACGATCCTGGAGTAAAAACAGAGAGAAGAGAAGAC ACTGGTTTATGCCCACCAACCACAGCAATGATGTTAGATAAAAGTTCATGGTCTCATCCAGCAGCTGATGATTTGTTTCGTACTCCATGTGATAATAGCT CAGGAACACAATCTATTGCACCTGAACAGGAACAGGTTGTCGGGAAATCTGAAAGTGGAAACATCCATACCACCGATACTGAGTTTTGTGGGAAAGATCC AGTCTTAGCCGGAAACTGTGCAGCTGTTAATAATAATGAGTATGATTATCCATTGAACGATGCCTCTCAAGCAGAAAGTGATCTCACGTTTTTTGGTAAT GATCAAGACAACAAAGGAAGCAGTGCCCTATTGTATTATGAGTGGCCTGATGACATAGGAAATTTTGAAGATGTTGACAGGATGTTCAGAAGCTGTGATG CAACTTTTGGGTTGGAGAGTCTTGGCGATGGAGATGACATGTGTTGGTTTCCTTCATCCCATCCTACTGAAGCATCTGAAGAAGCACCAAAAATGGGTTC CAAATTTCTTACTTCTGAGAGAAGTTTGGATGGTCCATCACAACAGCCTGGAGCATCTAGGCCAAGCAATGCTGTCTCATCTCTTAGCAGTTCCCAGAAT AAAAGTACATTGTTGGATGAGAAAACTAGTTCTGGTGATTCTGCTGCTCCTCATCAGTCAAAGCATTTGAACGGTTCAGACACAAAATCTATCAATTCAC CTGAAGAACACTTCAGGCTCCGACATCAGTTGGAAGGAAGGAAAAAGGAGCGGGCAGTCGAAGATGGTGATTATCTTCACCTGAATGAAAACTCAAAGCC ATTTGTGAATTCAAAACATTCTTGTGGCAAGTTTTCAAGTCACGAAACACAACAAAACTCGGGAACTGATAATGATCCGCAGGCACATATTCAATATATG AGCATGGACTATGACCATTCTCCAGACCACCTTGGAGTCAGTCCTTTTCAATCTGGAATCAAATATCAAGAGAATAGTTATCCAACGCCTTCTCATAAAG GTCCATCATATGCTTCAAACCTAGCGGAATCCTTGGGGAAGTCTAATGCAGCTTCACTGGAGACTCCACCAACAGCGATGGACAAAAAGTGTGAAAAGCA ATGTAATCAAGAGAGTGTAGGAGCACAGCCTGCTAAGATTCTGAAGTGTGCCAACATAGCAGATACAACATTTTCAACTGTAGTTCAAAAGCAAGTTGGT AAGTCTGAGTTTGAGATGGGCAGTTGTAGTGAGATTGATGGAGTTGAGGAGTTTGTTCCGGTAAAACTTGATTCTAATGCACAAGAGAGCTCTGGCATGA GCTATGTGCTAGATGATATCTCATTGGAGGCTACAAGTTTTCGACAGCTTCAACAAGTCACAGAACAGTTGGATATTAGGACGAAACTTTGCATAAGAGA CAGTCTGTATCGGTTGGCTAGGAGTGCTGTACAACGCCATAACTCCATGTATTCAAATGGTGGCAAGAGAGATAACAGGGATGCAGATGGTGCGACACTG GCCGAGGGAACAAATAGGGCACCAGCATTCATGGATATCGAAACTGATACGAACCCCATAGATAGATCCATCGCCCACTTGCTGTTCCATAGGCCGTCCG ACTCTTCTGTATTGGCCCCCAACGATCCTCAGTTCATCAGCTCTAATGCTACAACATCCACTTACTTGCCTTACGGAGTCGATTTCCCAACCGGTCCTTC TGGCAGATTATCCAACGGTCTTAATGGTGCGGACGCTTATGCAAACCTTTTGGGGTTCCCGGAACTCATCCCGCCGTACGCGACAGCTACCGACGATCAA ATACCGCAAGGCGTGAATTATGCTTCCGGCTCCGCTGGCGTTCGGGACGAGACCTCATATACACAACTGCTAAATCATCAAAATAAACTTTCTCGAACGT CGATAATATTGGGAAGCAAGGAGGCGGCTGATAGATTATTGGAGAAATGCATATACACAGTTGGAATAGGAAGCAACGACTGCATCAACAGCTATTTCCA ATCGATTTACTGGCAATTCTGA
AA sequence Show only first row Show all	>Lus10009319 pacid=23141891 polypeptide=Lus10009319 locus=Lus10009319.g ID=Lus10009319.BGIv1.0 annot-version=v1.0 MRSWAPPTHLQLCLQPPPPEIPRWIKRPKSWLPAFGNGASCARSKRLDARCARTSQKSPDDYHATLRALNSRGRKPRKSLGQHYMLNNEINDQLVAAANV GEGDVVLEIGPGTGSLTNVLISSGATVLAVEKDPYMAGLVKERFADTGRLKVVEEDFVKCNIGSHISLLLESLSATGDRPRFAKVVANIPFNISKDVVKQ LLPMGDIFSEVVLLLQEETAVRLTESSIRTTDYRPINLLVNFYSEPEYKLKVPRSNFFPQPNVDAAVVTFKLKQSVDYPAVDSFKSFFSTVNSAFNGKRK MLRNTLRHICTSTEIETALVHVGLSASSRPEELSLDDFVKLHNFLLDDNVWDEFSESDDHIVPRPSDQYSNPYGSSKRPRHEVADCEFDDPGVKTERRED TGLCPPTTAMMLDKSSWSHPAADDLFRTPCDNSSGTQSIAPEQEQVVGKSESGNIHTTDTEFCGKDPVLAGNCAAVNNNEYDYPLNDASQAESDLTFFGN DQDNKGSSALLYYEWPDDIGNFEDVDRMFRSCDATFGLESLGDGDDMCWFPSSHPTEASEEAPKMGSKFLTSERSLDGPSQQPGASRPSNAVSSLSSSQN KSTLLDEKTSSGDSAAPHQSKHLNGSDTKSINSPEEHFRLRHQLEGRKKERAVEDGDYLHLNENSKPFVNSKHSCGKFSSHETQQNSGTDNDPQAHIQYM SMDYDHSPDHLGVSPFQSGIKYQENSYPTPSHKGPSYASNLAESLGKSNAASLETPPTAMDKKCEKQCNQESVGAQPAKILKCANIADTTFSTVVQKQVG KSEFEMGSCSEIDGVEEFVPVKLDSNAQESSGMSYVLDDISLEATSFRQLQQVTEQLDIRTKLCIRDSLYRLARSAVQRHNSMYSNGGKRDNRDADGATL AEGTNRAPAFMDIETDTNPIDRSIAHLLFHRPSDSSVLAPNDPQFISSNATTSTYLPYGVDFPTGPSGRLSNGLNGADAYANLLGFPELIPPYATATDDQ IPQGVNYASGSAGVRDETSYTQLLNHQNKLSRTSIILGSKEAADRLLEKCIYTVGIGSNDCINSYFQSIYWQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	0	1
AT5G64170			dentin sialophosphoprotein-rel...		Lus10015846 [exp]	1.4	0.8861
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	2.4	0.8638
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10042292 [exp]	3.9	0.8184
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10019902 [exp]	6.0	0.7743
AT3G54500			unknown protein		Lus10024170 [exp]	6.0	0.8120
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	6.3	0.7991
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10039278 [exp]	7.5	0.6915
AT3G54500			unknown protein		Lus10039553 [exp]	7.7	0.7435
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030184 [exp]	7.9	0.7722
AT3G55580			Regulator of chromosome conden...		Lus10004700 [exp]	10.4	0.7544

Compare expression of checked genes

Lus10009319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.