Plant FIBer expression Database

Lus10009320 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G09390 223 / 1e-66 CD2-binding protein-related (.1.2)
AT5G64160 197 / 9e-59 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015844
[exp]
549 / 0 AT5G09390 258 / 8e-84 CD2-binding protein-related (.1.2)
Lus10015845
[exp]
405 / 1e-138 AT5G64160 206 / 9e-67 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G205700
[exp]
240 / 2e-72 AT5G09390 280 / 3e-91 CD2-binding protein-related (.1.2)
Potri.003G023700
[exp]
238 / 6e-72 AT5G09390 286 / 5e-94 CD2-binding protein-related (.1.2)
Potri.003G023601
[exp]
224 / 1e-68 AT5G64160 194 / 4e-62 unknown protein
Potri.001G206032
[exp]
0 / 1 AT5G64160 0 / 1 unknown protein
PFAM info
Representative CDS sequence
>Lus10009320 pacid=23141889 polypeptide=Lus10009320 locus=Lus10009320.g ID=Lus10009320.BGIv1.0 annot-version=v1.0
ATGGATGGAAAGTTGCCGCGCTCCTCCCGCAAGCGCCCTCGCCAAGACGATTTTGAAGATGATGAATCCACGAAGAATTCCATGCAGCAGAAGAAAGTAA
GATTCCCGAAAGGTAAGAAGGTAAAGCCAGGGGATGAAACTCCCGCCGCCGCAGTCGCACCCATTGGTCCTGAAAGAGCTGAACCTGTGGACCGTGTCGC
GGAAGACGCTCGGGTTGCTGCCACAGAGCGTGCGAAGCGGCGGAACCAATTCACTACTGAGCTGTTTGACAAAGAAGTTAATGACCGCTCTCGAGCTGAG
GTCGCTTATGAGGATAACAATGATTTCGTTGATGATGGGATTCAAATCGAACCATTTAATCTTGACAAAGAGAGGGAAGAAGGTTATTTTGATGCCCAGG
GAAACTTTGTGGAATATGTCAATGAGAATGAATTCAAGGATCCGTGGCTTGACACTGTCGAAGTTGATACAAGATTTGCTAAAAGGAATACCAAGGTAGC
TGAAGATGATGATGCCCCTGAAATGTCTTCTCAAGAGACTGGACAAATAAAGAGCCGAATTGCAAGTTTGCTGGAGCCAGGAGAAACGGTTTTACAAGCT
TTGAGAAGGTTGAAGGGAACCTCAAATGGGAGGAAAGAAAAAATGTCAGTTCATATACAAGCTCAATTTGATCAGCTCACTGAAGATGCCAACAAACTGC
TGGATAGTGGTGAACACAATGTTTACCATGATTTGCAAGAAAAATTTGCACGCGAGGCAGAACCCTCTGGTGAAGCAGCGGATGCATATGACATGTTTGG
AGATGAAGATGATAACACTATTGCTATAACGTCTTCTGAGAGCAATACTTTGATCCCAGCCTCTGATTCTAATGCTGGAGGTTCAGAGAGTGATTATGTT
TTTGATGATGCTTCTGGGTACTACTACAGCAGCAGCTTGGGGTATTATTATGACCCGAATACTGGACTCTACTGCTCTGCAGCATCAGGACAATGGTTCG
CGGACCATGGGTTGTCGGATGGTGTGTCAATCGGATTACGGTTTATCGGATCACAGGTTCACCGGATCACAGGTTCATCGGGTTTTGGACCGGACGGATC
ACAGGGATCTCGTTTTTGCTTCACCCAGCCAGCCAATACCGCAATCCGGACGCAAAAACCACGAAACCTAGAAACTCAGGCAGCGGTCTGTAAAATATTG
CGAGTCTCCGTGCTCCAGCTCCCATTTAATTCATTACTTCTAAGTAACAAGATGAGCTTGGCACTCATCCAGAGCTACTCTTCTGCTGAAGACGAAGAAA
CTGCCTCGGCGGAAGATTACTCCTTCTCCGACGAGGACGAAGAAGAACAAGATGAAGAAGAAAACGGAACTTCCTCAGGCGTTGGTGGTGCCAAAACCCG
TTCCCTTTCCTACAAGTCCATCTACGAACCTTCTGCTGCTTCCAATTCCGCCTCTGGCCTTCCTTCCGCTTTCGATGCTTTCTCCGAAATTTCAAGGCCG
CCACAGTTTCTTAACAATTCCGTCGTAGGGAATGGTTCTGGTAGAGAAATTGATTATCAACTACCAAGGCATGGACGTCGGAGGGCTCGCAAGGAGAAAA
AAGAGCTCCCCCCAGGAGCTGTTTTGGAATCAAAAGCTCAACTTGTTGGAATACATGATCGAGTAAGGAGTGATATTCAGAGTAGTCAAGCAGCAGCATC
ATCTGCTCCAACCACAACAGATGCAGGAGCACAGCGTGTGGCTGGTGCAACAATTCCCAGTGCTGAAGATGCTGCGGAGTTATTGAGGATGTGTTTGCAA
TGTGGCATCCCAAAAACCTACACGAGTGGGCGTGGAATGACATGCCCAGTCTGCGGTGATCGTCCACCCAGTGAAGCTAGCGAGGAGAGCAAGAAGAGGG
GATCGGGCATCAAAGATAAGGAGAAGAGTAAGAGGATGAAGGGACAATCATCTCATGCAACTTGGAAGAGTGAAACAGAAATGGCACTTCGGCAACAATT
TGATTAG
AA sequence
>Lus10009320 pacid=23141889 polypeptide=Lus10009320 locus=Lus10009320.g ID=Lus10009320.BGIv1.0 annot-version=v1.0
MDGKLPRSSRKRPRQDDFEDDESTKNSMQQKKVRFPKGKKVKPGDETPAAAVAPIGPERAEPVDRVAEDARVAATERAKRRNQFTTELFDKEVNDRSRAE
VAYEDNNDFVDDGIQIEPFNLDKEREEGYFDAQGNFVEYVNENEFKDPWLDTVEVDTRFAKRNTKVAEDDDAPEMSSQETGQIKSRIASLLEPGETVLQA
LRRLKGTSNGRKEKMSVHIQAQFDQLTEDANKLLDSGEHNVYHDLQEKFAREAEPSGEAADAYDMFGDEDDNTIAITSSESNTLIPASDSNAGGSESDYV
FDDASGYYYSSSLGYYYDPNTGLYCSAASGQWFADHGLSDGVSIGLRFIGSQVHRITGSSGFGPDGSQGSRFCFTQPANTAIRTQKPRNLETQAAVCKIL
RVSVLQLPFNSLLLSNKMSLALIQSYSSAEDEETASAEDYSFSDEDEEEQDEEENGTSSGVGGAKTRSLSYKSIYEPSAASNSASGLPSAFDAFSEISRP
PQFLNNSVVGNGSGREIDYQLPRHGRRRARKEKKELPPGAVLESKAQLVGIHDRVRSDIQSSQAAASSAPTTTDAGAQRVAGATIPSAEDAAELLRMCLQ
CGIPKTYTSGRGMTCPVCGDRPPSEASEESKKRGSGIKDKEKSKRMKGQSSHATWKSETEMALRQQFD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G09390 CD2-binding protein-related (.... Lus10009320
[exp]
0 1
AT3G08020 PHD finger family protein (.1) Lus10016404
[exp]
2.2 0.8491
AT3G27260 GTE8 global transcription factor gr... Lus10032076
[exp]
6.5 0.8019
AT5G61060 HDA5, HDA05, AT... histone deacetylase 5 (.1.2) Lus10034689
[exp]
9.9 0.8236
AT4G25550 Cleavage/polyadenylation speci... Lus10038867
[exp]
12.0 0.7608
AT4G16580 Protein phosphatase 2C family ... Lus10016309
[exp]
16.1 0.8080
AT3G09100 mRNA capping enzyme family pro... Lus10035534
[exp]
16.1 0.8182
AT3G54670 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE... Lus10024895
[exp]
16.7 0.8155
AT5G08560 transducin family protein / WD... Lus10001410
[exp]
17.0 0.7810
AT1G75340 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10040567
[exp]
22.6 0.7176
AT4G26100 CKL1, CK1 casein kinase 1 (.1) Lus10011940
[exp]
22.6 0.7853

Lus10009320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.