Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62870 395 / 8e-141 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT2G47610 378 / 6e-134 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT5G08180 41 / 0.0002 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015841 [exp] 449 / 2e-160 AT3G62870 460 / 4e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10035632 [exp] 442 / 7e-159 AT3G62870 453 / 2e-163 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10010745 [exp] 438 / 8e-157 AT3G62870 452 / 1e-162 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10035650 [exp] 436 / 1e-156 AT3G62870 461 / 1e-166 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10012463 [exp] 434 / 4e-156 AT3G62870 457 / 2e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10010763 [exp] 417 / 1e-149 AT3G62870 441 / 3e-159 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10020500 [exp] 429 / 1e-142 AT1G09970 755 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000421 [exp] 43 / 5e-05 AT5G08180 240 / 9e-83 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10004366 [exp] 43 / 6e-05 AT5G08180 227 / 1e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101000 [exp] 422 / 4e-151 AT3G62870 376 / 3e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.017G100800 [exp] 422 / 4e-151 AT3G62870 377 / 1e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.004G113800 [exp] 421 / 1e-150 AT3G62870 399 / 5e-142 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.004G113900 [exp] 406 / 2e-144 AT3G62870 362 / 7e-127 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.001G326400 [exp] 395 / 1e-140 AT2G47610 385 / 1e-136 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.008G110100 [exp] 42 / 7e-05 AT5G08180 225 / 8e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence Show only first row Show all	>Lus10009322 pacid=23141854 polypeptide=Lus10009322 locus=Lus10009322.g ID=Lus10009322.BGIv1.0 annot-version=v1.0 ATGGGCCTAAGCCCAATCGCTCCCAAAAGAGGTGTCAAGGCTCCAGTTGCTTCTAAGAAGAAGACAGAGAAGGTTGTGAACCCTCTGTTTGAGAAGCGAC CAAAACAATTTGGAATTGGAGGTGCTCTCCCACCAAAGAGGGACTTGACCAGATTTGTCAAGTGGCCCCATGTTGTTCGTATTCAGAGGCAAAGAAGGAT CCTTAAGCAGCGTTTGAAGGTTCCTCCAGCTGTTAACCAGTTCACCAAGGCACTGGACAAGAACTTGGCTACACAGCTATTCAAGCTGTTGCTGAAGTAT CGCCCTGAGGATAAGGCTGCTAAGAAGGAAAGGCTTATTAAGAAAGCACAAGCTGAGGCTGAGGGAAAGACTGTGGAATCTAAGAAACCGATTGTTGTCA AGTACGGGCTGAATCATGTCACATATCTCATCGAGCAGAACAAGGCTCAACTGGTCATCATTGCCCATGACGTTGACCCAATCGAGCTTGTCGTTTGGTT GCCTGCCTTGTGCCGCAAGATGGAGGTCCCTTACGCTATCGTGAAGGGCAAATCACGACTTGGAGCGATTGTCCACAAGAAAACAGCTGCTGCTTTGTGC CTTACCTCTGTGAAGAACGAGGATAAGATGGAGTTCAGCAAGATACTGGAGGCAGTCAAGGCCAACTTCAATGACAAATTCGATGAGCACCGCAAGAGGT GGGGAGGTGGTATCATGGGATCCAAATCCCAGGCGAAGACCAAAGCTAAAGAGAGACTCTTGGCCAAGGAGGCTGCACAAAGGATGACCTAA
AA sequence Show only first row Show all	>Lus10009322 pacid=23141854 polypeptide=Lus10009322 locus=Lus10009322.g ID=Lus10009322.BGIv1.0 annot-version=v1.0 MGLSPIAPKRGVKAPVASKKKTEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPHVVRIQRQRRILKQRLKVPPAVNQFTKALDKNLATQLFKLLLKY RPEDKAAKKERLIKKAQAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVIIAHDVDPIELVVWLPALCRKMEVPYAIVKGKSRLGAIVHKKTAAALC LTSVKNEDKMEFSKILEAVKANFNDKFDEHRKRWGGGIMGSKSQAKTKAKERLLAKEAAQRMT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10009322 [exp]	0	1
AT4G25740			RNA binding Plectin/S10 domain...		Lus10039282 [exp]	1.0	0.9367
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10043158 [exp]	1.4	0.8933
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10022910 [exp]	2.4	0.8784
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10008640 [exp]	4.5	0.8556
AT4G15000			Ribosomal L27e protein family ...		Lus10010461 [exp]	8.9	0.8510
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10038905 [exp]	9.2	0.7698
AT3G02080			Ribosomal protein S19e family ...		Lus10030702 [exp]	10.6	0.8458
AT5G27820			Ribosomal L18p/L5e family prot...		Lus10031487 [exp]	11.9	0.7473
AT3G53740			Ribosomal protein L36e family ...		Lus10040728 [exp]	12.1	0.7458
AT5G60670			Ribosomal protein L11 family p...		Lus10023186 [exp]	15.5	0.8383

Compare expression of checked genes

Lus10009322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.