Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65260 252 / 5e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G10350 244 / 3e-83 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT5G51120 229 / 7e-77 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT3G12640 61 / 6e-11 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G16940 52 / 3e-08 Splicing factor, CC1-like (.1.2.3) AT3G55460 50 / 1e-07 SCL30, At-SCL30 SC35-like splicing factor 30 (.1) AT2G36660 50 / 3e-07 PAB7 poly(A) binding protein 7 (.1) AT2G23350 49 / 4e-07 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G48920 49 / 7e-07 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (.1) AT3G18610 48 / 8e-07 ATNUC-L2, PARLL1, ATRANGAP1 PARALLEL1-LIKE 1, nucleolin like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015840 [exp] 321 / 4e-114 AT5G65260 261 / 9e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032510 [exp] 232 / 4e-78 AT5G65260 278 / 2e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043008 [exp] 226 / 5e-76 AT5G65260 278 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032509 [exp] 232 / 4e-73 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10015696 [exp] 72 / 1e-14 AT3G12640 417 / 1e-136 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10037701 [exp] 71 / 1e-14 AT3G12640 412 / 2e-135 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017403 [exp] 55 / 6e-09 AT3G18610 216 / 5e-59 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10025075 [exp] 54 / 8e-09 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10034466 [exp] 54 / 8e-09 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G051600 [exp] 274 / 4e-95 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G311600 [exp] 270 / 2e-93 AT5G65260 238 / 2e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G073200 [exp] 264 / 8e-91 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.007G095800 [exp] 254 / 4e-87 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.015G110800 [exp] 251 / 1e-85 AT5G51120 266 / 1e-90 polyadenylate-binding protein 1 (.1.2.3) Potri.012G115100 [exp] 249 / 4e-85 AT5G65260 271 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G145050 [exp] 71 / 2e-15 AT2G24350 107 / 4e-27 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G269200 [exp] 70 / 3e-14 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G063800 [exp] 68 / 1e-13 AT3G12640 418 / 6e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G071100 [exp] 56 / 2e-09 AT1G48920 243 / 1e-72 PARALLEL 1, nucleolin like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10009323 pacid=23141859 polypeptide=Lus10009323 locus=Lus10009323.g ID=Lus10009323.BGIv1.0 annot-version=v1.0 ATGAAGAAGCGGTTAAAGGAAATCGAAGATGAAGCAGCTGCTCTGCGGGAGATGCAGGCTAAGGTCGAGAAGGAGATGGGTTCTGGTCAAGATGCTGGTG GTTCAGGATCATCTCAAGCAAGCAGAGAGGAAGTAGATTCTCGATCGGTTTTTGTTGGCAATGTGGATTACTCGTGTACACCTGAGGAAGTGCAGCAGCA TTTCCAGTCTTGTGGAACAGTAAATAGGATCACAATTCGCACAGATAAGTACGGGCAACCAAAGGGTTATGCTTATGTGGAATTCCTTGAGGTAGAGGCT GTTCAAGAGGCTATTCTCTTAAACGAGTCTGAGCTACATGGCCGACAGTTGAAGGTAACTGCTAAGCGGACTAATGTACCGGGAATGAAGCAGTTCCGGC CTCGTCGAGCGAACCCTTATGCTGGATTTGCACCAAGGGGTGCATTTATATCTCCTTATTTCGACCCATATGGCTATGGGAAGATACCTAGGTTCAGAAT GGCACCACGTTACAGCCCCTACAACTGA
AA sequence Show only first row Show all	>Lus10009323 pacid=23141859 polypeptide=Lus10009323 locus=Lus10009323.g ID=Lus10009323.BGIv1.0 annot-version=v1.0 MKKRLKEIEDEAAALREMQAKVEKEMGSGQDAGGSGSSQASREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKYGQPKGYAYVEFLEVEA VQEAILLNESELHGRQLKVTAKRTNVPGMKQFRPRRANPYAGFAPRGAFISPYFDPYGYGKIPRFRMAPRYSPYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10009323 [exp]	0	1
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10026670 [exp]	1.7	0.8963
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	4.6	0.9019
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10011507 [exp]	7.3	0.8712
AT5G07590			Transducin/WD40 repeat-like su...		Lus10032495 [exp]	9.2	0.8918
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	11.3	0.8999
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10020020 [exp]	12.6	0.8824
AT1G50660			unknown protein		Lus10021521 [exp]	12.8	0.8930
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10011953 [exp]	15.0	0.8632
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	15.2	0.8927
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10039009 [exp]	15.7	0.8904

Compare expression of checked genes

Lus10009323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.