Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57190 881 / 0 PSD2 phosphatidylserine decarboxylase 2 (.1) AT4G25970 868 / 0 PSD3, PSD2 phosphatidylserine decarboxylase 3 (.1) AT4G16700 69 / 4e-12 PSD1 phosphatidylserine decarboxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010761 [exp] 872 / 0 AT5G57190 838 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10015838 [exp] 646 / 0 AT5G57190 561 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10015839 [exp] 459 / 2e-159 AT4G25970 381 / 4e-130 phosphatidylserine decarboxylase 3 (.1) Lus10035633 [exp] 347 / 1e-113 AT5G57190 360 / 2e-119 phosphatidylserine decarboxylase 2 (.1) Lus10007807 [exp] 70 / 2e-12 AT4G16700 515 / 0.0 phosphatidylserine decarboxylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G172400 [exp] 948 / 0 AT4G25970 966 / 0.0 phosphatidylserine decarboxylase 3 (.1) Potri.003G061700 [exp] 942 / 0 AT5G57190 956 / 0.0 phosphatidylserine decarboxylase 2 (.1) Potri.003G078300 [exp] 52 / 1e-06 AT4G16700 566 / 0.0 phosphatidylserine decarboxylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02666 [flax] [poplar] PS_Dcarbxylase Phosphatidylserine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10009324 pacid=23141851 polypeptide=Lus10009324 locus=Lus10009324.g ID=Lus10009324.BGIv1.0 annot-version=v1.0 ATGGGGAATGGCAGCTCCAAAGACTCCTCCTCCTCCTCTGACGAGGAAGGTGACAGATCCACACAGTTGTCTGCAATGGCGCAGAAGCTTCACATCCGCG GTCGTCCCGACAGTCGCCGTCGCCGCCTTCGCAGCCGTCTGTTTCGCCGGTCGTGTACCAAGAATGACTCCAGCTGCTCAGCTGGGCGCGGTCAAACCAT CAGCAAGCTTCTCTCCGTGGAGGATTTTGCTGGAATTGCGCTTCTTACTCTCATCAGTGCTGAAATGAAATTCAAAGACAAGTGGCTTGCTTGCGTTTCT TTGGGGGAGCAAACTTTCCGTACAGAGACTTCAGATCAGTTAAGCCTTTCCCAATTTATGCTCATTTTATTCTTCGTCTTCACTTACTGTCATCAAAGAA CTGATAGACCTGTATGGAACTCGGAGAAAAAACTTCTTCTGGAGAAAAATGGACCTCATATTCTCAGGATTTCTGTCTTTGAGACTAACAGACTATCAAA AAACAATCTCATTGGCTATTGTGAGATTGATCTGCTGGAATTTCTAATTCAGGATATTGATTCAGATGCCACAGTTTTTGAACTTCTTGATCCATCGTCA TCTGGCATCACTGTTGGCAAAATTTCTCTTTCATGTGATATCGAGGATCCAATTGAGACTGAGAAAAACTTTGCACGACGCATCTTGTCCATTGTGGACT ACAACCAGGATGGGTTTCTTTCATTTGCTGAATTTTCGGACTTAATTAAGGCTTTCGGAAATGAGGTGGCCGATAATAAGAAAGAGGAGCTATTTAAAGC TGCAGACACCAACAACGATGACAGTGTGAGCTTAGATGAGTTGGCTAGTCTTCTTGCCATTCAACAAGAAAAGGAACCTTTAATAAATTGCTGTCCAGTT TGTGGCGAGATTCTTGAAGTTTCTGACAAGCTGAACACAGTGGTGCATTTGAGTCTTTGTTTTGATGAAGGAACTGGAAACCAAGTTATGACAGGAGGGT TTTTGACTGATAAACAAGCTTCATATGGGCTCAAGCGCTTCGCATATTGTGGTATGCATGATTCTGCAACTTTTGTTCACCCTTTCTCTCTGCTTATGGT ATTTCCATGGGCGCACCCTGATCCTTTCCAATGTGGAGATTTTGCCAAGTTCTTGTCTGTAATTGATCGAAAGACAAAGAGGCTAGTGGAGGAGTTAATT GATGGAAAGATAGTTATGTCAATGAGAGCAATTTACCAGTCGAAGATAGGAATACAACTTATGGATAAAGGGGCGAAAGAGATTTTGCAAAGCATTTCTG AGAAGCAAGGGAAGAAAATGAACGCAGTTGAATCAGCTAAAGAAATTCCTAAGTTCATTGAACTTTTTAAGGATCAAATCAATCTGGCTGAAGTTAAGCA CCCTCTGGATCATTTTAAGACATTCAATGAGTTCTTCGTGAGAGAGTTGAAACTTGGTGCAAGACCGGTTGCCATGGCAGAGCGGGATGACGTTGCTCTA TGTGCAGCTGATTGTCGCTTACTGGCATTCAAATCAGAAGCTGACTCAAAAAGATTTTGGATCAAGGGCAAGAAATTTTCTATCCAAGGCCTGCTTGGGA ATGAAATTAGTTCTAGCAGTTTCAAAGATGGAACTGTGGTCATATTTCGGCTGGCACCTCAGGATTATCACCGATTCCATTTTCCAGTCTCCGGAATTAT TGAACACATTCAAGACATCTCAGGATGTTTATACACCGTGAATCCTATTGCTGTAAACAGCAAGTATTGTAATGTCTTCACGGAGAACAAGCGAGCTGTA GCAATTATTTCCACCGCTCATTTTGGAAAGGTAGCTTTTGTTGCAATTGGGGCAACCATGGTCGGTAGCATCACATTCTTGAAGAAAGCTGGTGACCACG TAAAGAAAGGAGATGAGTTTGGCTATTTCTCCTTTGGCGGAAGCACTGTGATTTGCATCTTTGAGAAGGATTCGATTCAGATTGATGAAGACCTACTTGC AAATAGTGCAAGATCAGTTGAAACATTGGTTCAAGTAGGAATGACTCTGGGCGTTGCCACGAAGAACTGA
AA sequence Show only first row Show all	>Lus10009324 pacid=23141851 polypeptide=Lus10009324 locus=Lus10009324.g ID=Lus10009324.BGIv1.0 annot-version=v1.0 MGNGSSKDSSSSSDEEGDRSTQLSAMAQKLHIRGRPDSRRRRLRSRLFRRSCTKNDSSCSAGRGQTISKLLSVEDFAGIALLTLISAEMKFKDKWLACVS LGEQTFRTETSDQLSLSQFMLILFFVFTYCHQRTDRPVWNSEKKLLLEKNGPHILRISVFETNRLSKNNLIGYCEIDLLEFLIQDIDSDATVFELLDPSS SGITVGKISLSCDIEDPIETEKNFARRILSIVDYNQDGFLSFAEFSDLIKAFGNEVADNKKEELFKAADTNNDDSVSLDELASLLAIQQEKEPLINCCPV CGEILEVSDKLNTVVHLSLCFDEGTGNQVMTGGFLTDKQASYGLKRFAYCGMHDSATFVHPFSLLMVFPWAHPDPFQCGDFAKFLSVIDRKTKRLVEELI DGKIVMSMRAIYQSKIGIQLMDKGAKEILQSISEKQGKKMNAVESAKEIPKFIELFKDQINLAEVKHPLDHFKTFNEFFVRELKLGARPVAMAERDDVAL CAADCRLLAFKSEADSKRFWIKGKKFSIQGLLGNEISSSSFKDGTVVIFRLAPQDYHRFHFPVSGIIEHIQDISGCLYTVNPIAVNSKYCNVFTENKRAV AIISTAHFGKVAFVAIGATMVGSITFLKKAGDHVKKGDEFGYFSFGGSTVICIFEKDSIQIDEDLLANSARSVETLVQVGMTLGVATKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	0	1
AT1G71090			Auxin efflux carrier family pr...		Lus10016705 [exp]	1.0	0.8880
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	2.0	0.8790
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10014310 [exp]	3.2	0.8837
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	3.9	0.8799
AT1G68490			unknown protein		Lus10034327 [exp]	4.1	0.8407
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	4.2	0.8762
AT3G14750			unknown protein		Lus10038143 [exp]	5.7	0.8715
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	6.3	0.8783
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	7.0	0.8739
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	9.8	0.8268

Compare expression of checked genes

Lus10009324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.