Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03980 65 / 3e-12 SGNH hydrolase-type esterase superfamily protein (.1) AT2G27360 64 / 1e-11 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28570 62 / 3e-11 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G31550 59 / 7e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28580 58 / 8e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28590 57 / 2e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28600 55 / 1e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28640 55 / 1e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28660 54 / 2e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28610 54 / 3e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020657 [exp] 70 / 2e-13 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013938 [exp] 68 / 5e-13 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10010208 [exp] 63 / 3e-11 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10000523 [exp] 62 / 5e-11 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019947 [exp] 59 / 5e-10 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015477 [exp] 57 / 3e-09 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10003516 [exp] 55 / 6e-09 AT5G03980 103 / 6e-26 SGNH hydrolase-type esterase superfamily protein (.1) Lus10024085 [exp] 56 / 7e-09 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015476 [exp] 56 / 8e-09 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054300 [exp] 71 / 4e-14 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G064100 [exp] 68 / 1e-13 AT1G28580 221 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G054400 [exp] 66 / 1e-12 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G015200 [exp] 65 / 5e-12 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024300 [exp] 60 / 2e-10 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 59 / 3e-10 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 57 / 2e-09 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 57 / 3e-09 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 57 / 3e-09 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.001G463900 [exp] 56 / 8e-09 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10009325 pacid=23141893 polypeptide=Lus10009325 locus=Lus10009325.g ID=Lus10009325.BGIv1.0 annot-version=v1.0 ATGGCTCCCAAATACGCCAATGTTTCTCTGCATGATCAGATCGACTGTTTTCGTCATTTCACTGCTCTTTGTCCACGTTGCCACGTGGGGTGTGGCCACA ACGACTACGACATTTTCCTAACATCATCTCCTGGACGTCGGACGATCAAGCTAGCTCAAACCCAACTGTTGCCCAAAGTTGTGGAAACCATTGGGAAAGC CATCAAACGACTCGTCAAAGCTGGAGCTACAACGATAACAGTTCCAGGTCTTCTACCTCTGGGTTGCTCCCCAAAATCCTTGACCATTTTCCCGTCCAGG AATGCTTCAGATTACGACGAGCTGGGTTGTTTGAAGCCATTAAATGACCTATTTGACCTCCACAACGATCATCTTCAGCGGCTCATCCAACGGCTGAGGC ATCAATCAGTTCCCCCGGGACTTCCGGATTGTGTAGGGCGATTACTACCGTGCCATGAATTGGGGTTTCCATCATCATTCTTCACTAGGGTTCAAGAATC TGACGGTAGCGTGTTGCGGGTTTGGAACACAATTACAGTGACGAAGAGAAAGTGTGTGGTGCACAGGGATTCAACAAGTACCGCGGTAATCCAGGGACAT CAGTTCTCTGGGACCATACCCATCCATCCCATCGAGCTGTTCGGTTCGCCGCCAACAACTTTATTCAAAGCGTCGCCGAAAAGCTTGGTTGCCGGAGTTG AATTATAG
AA sequence Show only first row Show all	>Lus10009325 pacid=23141893 polypeptide=Lus10009325 locus=Lus10009325.g ID=Lus10009325.BGIv1.0 annot-version=v1.0 MAPKYANVSLHDQIDCFRHFTALCPRCHVGCGHNDYDIFLTSSPGRRTIKLAQTQLLPKVVETIGKAIKRLVKAGATTITVPGLLPLGCSPKSLTIFPSR NASDYDELGCLKPLNDLFDLHNDHLQRLIQRLRHQSVPPGLPDCVGRLLPCHELGFPSSFFTRVQESDGSVLRVWNTITVTKRKCVVHRDSTSTAVIQGH QFSGTIPIHPIELFGSPPTTLFKASPKSLVAGVEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03980			SGNH hydrolase-type esterase s...		Lus10009325 [exp]	0	1
					Lus10028069 [exp]	5.4	0.9178
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	6.5	0.9000
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10018050 [exp]	8.8	0.8878
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10042371 [exp]	10.1	0.8994
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	10.5	0.8922
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Lus10024065 [exp]	11.0	0.8528
					Lus10026794 [exp]	12.1	0.8275
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	12.2	0.8989
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10036314 [exp]	13.7	0.8066
AT1G54520			unknown protein		Lus10006109 [exp]	14.1	0.8725

Compare expression of checked genes

Lus10009325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.