Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03550 49 / 2e-07 RING/U-box superfamily protein (.1) AT1G72310 45 / 2e-06 ATL3 RING/U-box superfamily protein (.1) AT1G72220 45 / 3e-06 RING/U-box superfamily protein (.1) AT3G10910 45 / 3e-06 RING/U-box superfamily protein (.1) AT5G17600 45 / 3e-06 RING/U-box superfamily protein (.1) AT1G76410 44 / 5e-06 ATL8 RING/U-box superfamily protein (.1) AT1G23980 44 / 5e-06 RING/U-box superfamily protein (.1) AT2G42350 44 / 5e-06 RING/U-box superfamily protein (.1) AT5G57750 44 / 6e-06 RING/U-box superfamily protein (.1) AT3G62690 44 / 7e-06 ATL5 AtL5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015837 [exp] 170 / 1e-55 AT1G20823 61 / 3e-12 RING/U-box superfamily protein (.1) Lus10008797 [exp] 48 / 4e-07 AT5G40250 77 / 2e-16 RING/U-box superfamily protein (.1) Lus10036380 [exp] 46 / 8e-07 AT5G05280 96 / 2e-25 RING/U-box superfamily protein (.1) Lus10022223 [exp] 46 / 1e-06 AT1G23980 81 / 2e-17 RING/U-box superfamily protein (.1) Lus10008972 [exp] 45 / 2e-06 AT5G06490 76 / 2e-17 RING/U-box superfamily protein (.1) Lus10033425 [exp] 45 / 3e-06 AT3G10910 82 / 6e-20 RING/U-box superfamily protein (.1) Lus10035677 [exp] 45 / 5e-06 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10037264 [exp] 45 / 6e-06 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10032161 [exp] 44 / 8e-06 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G071300 [exp] 46 / 1e-06 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.005G113200 [exp] 45 / 3e-06 AT2G17450 66 / 2e-13 RING-H2 finger A3A (.1) Potri.001G159300 [exp] 44 / 3e-06 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1) Potri.010G206200 [exp] 44 / 3e-06 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.003G073300 [exp] 44 / 5e-06 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1) Potri.007G064401 [exp] 44 / 5e-06 AT1G20823 118 / 2e-33 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 44 / 6e-06 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 43 / 8e-06 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.008G071000 [exp] 43 / 9e-06 AT3G11110 122 / 3e-36 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 44 / 1e-05 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10009326 pacid=23141895 polypeptide=Lus10009326 locus=Lus10009326.g ID=Lus10009326.BGIv1.0 annot-version=v1.0 ATGTGGTGGCCATGGTGGCAATATCTATACTTTACGCTTCCGTTCCTAATTGCCCTCCTCGCCGTGCTATACATTCTCCGCGACCGTATAATCAACCGCG GCGGCCACACTCCTCCGCAGCTGGTTCAGGGAAAAGGCACTACTACTGCGATCACTATTGACCTTCCGGGGAAGGTGATTAAGTATTACTGTGAAGAAGA CGGCGGATGTGGCGGCGGATGTGCGATATGCTTGGAGGAGTGGGGAGAAGGAGACGAGTGTAGAGTGCTGCCGGAGTGCAACCACGTTTACCATAAGGTT TGCGTTGACGGCTGGCTGTTGACCGGGGTCAACGACCATGATCAGTACCGTCGTTGTTGCCCGATTTGCCGCAGTTTTGTTTTTGACTCCAGTATTGTGT GA
AA sequence Show only first row Show all	>Lus10009326 pacid=23141895 polypeptide=Lus10009326 locus=Lus10009326.g ID=Lus10009326.BGIv1.0 annot-version=v1.0 MWWPWWQYLYFTLPFLIALLAVLYILRDRIINRGGHTPPQLVQGKGTTTAITIDLPGKVIKYYCEEDGGCGGGCAICLEEWGEGDECRVLPECNHVYHKV CVDGWLLTGVNDHDQYRRCCPICRSFVFDSSIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03550			RING/U-box superfamily protein...		Lus10009326 [exp]	0	1
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	1.7	0.9355
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	2.0	0.9381
AT5G15870			glycosyl hydrolase family 81 p...		Lus10042525 [exp]	4.5	0.9333
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	6.3	0.9508
AT1G05060			unknown protein		Lus10030021 [exp]	16.7	0.9350
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10016474 [exp]	20.2	0.9326
AT1G43790		TED6	tracheary element differentiat...		Lus10029760 [exp]	20.7	0.9312
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10002296 [exp]	20.8	0.8925
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008635 [exp]	26.0	0.9235
					Lus10018742 [exp]	26.8	0.9231

Compare expression of checked genes

Lus10009326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.