Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70820 457 / 6e-159 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) AT5G17530 183 / 3e-53 phosphoglucosamine mutase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015835 [exp] 557 / 0 AT1G70820 901 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10023518 [exp] 174 / 1e-49 AT5G17530 896 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Lus10040402 [exp] 117 / 4e-29 AT5G17530 778 / 0.0 phosphoglucosamine mutase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131400 [exp] 481 / 2e-168 AT1G70820 964 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Potri.008G039200 [exp] 184 / 1e-53 AT5G17530 872 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Potri.010G223000 [exp] 184 / 2e-53 AT5G17530 865 / 0.0 phosphoglucosamine mutase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02880 [flax] [poplar] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Lus10009327 pacid=23141844 polypeptide=Lus10009327 locus=Lus10009327.g ID=Lus10009327.BGIv1.0 annot-version=v1.0 ATGGCCGTCACAAGATCCGCCGTCCTCGACAACTCCGCCGACCTAGGGATCGTCTTCGACACCGACGTAGACAGGAGCGGGGTCGTCGATAGCGCCGGAA ACCCAATCAACGGAGACAAGCTGATCGCCCTCATGTCGGCAATCATCCTAAGGGAGCATCCGGAGACCACGATCGTGACCGACGCCAGAACGAGCATGGC GCTTTCTAAGTTCATCACAGAGCGGGGCGGGCGGCATTGCCTATACCGGGTCGGTTACCGGAACGTGATCGACAAGGGAGTCCAGTTGAACAAGGACGGG ATCGAGGCGCATCTGATGATGGAGACCTCCGGACACGGCGCCCTCAAGGAGAATCATTATCTTGATGACGGGGCATACATGGTGGTGAAAATCATAATTG AAATGGTAAGGATGAAGCTGCAAGGATCAGACGAAGGAATTGGGTCACTGATAAAAGAGCTGGAACAACCTCTGGAAACTGCAGAGCTAAGAATGAATGT CGTCTCTGAACCTAAAGACGCTAAAGCAATAGCAGTTCAGGCAATCGAGACATTCAGGGAATACGTTGAGGAAGGGAAACTAGAAGGGTGGGAACTGGAT TCGTGCGGAGATTGTTGGGTCAGCGACGGATGCCTCGTCGACACAGACGACACTACTGCGGCGCCTGTAGACGCGTACATGTACAGAGCCAAAGTTAGGG ATTCCGAGGACGCAGAGATAGGATGGGTGCACCTGCGGCAGAGCATCCACAACCCGAACATTGCGGTCAACTTACAGTCCACTGTCCCTGGTGGATGTCA GCTCATGTCCAGAGCTCTCAGAGACAAGTTTCTTGGGGCGAGTGGGGTAGACAAGTTGTTGGATACAGCTCAGATTGATGAGTTTGCTAGTAATGGGTTA GCAAATTGA
AA sequence Show only first row Show all	>Lus10009327 pacid=23141844 polypeptide=Lus10009327 locus=Lus10009327.g ID=Lus10009327.BGIv1.0 annot-version=v1.0 MAVTRSAVLDNSADLGIVFDTDVDRSGVVDSAGNPINGDKLIALMSAIILREHPETTIVTDARTSMALSKFITERGGRHCLYRVGYRNVIDKGVQLNKDG IEAHLMMETSGHGALKENHYLDDGAYMVVKIIIEMVRMKLQGSDEGIGSLIKELEQPLETAELRMNVVSEPKDAKAIAVQAIETFREYVEEGKLEGWELD SCGDCWVSDGCLVDTDDTTAAPVDAYMYRAKVRDSEDAEIGWVHLRQSIHNPNIAVNLQSTVPGGCQLMSRALRDKFLGASGVDKLLDTAQIDEFASNGL AN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70820			phosphoglucomutase, putative /...		Lus10009327 [exp]	0	1
AT1G70820			phosphoglucomutase, putative /...		Lus10015835 [exp]	1.0	0.9351
AT3G50685			unknown protein		Lus10014321 [exp]	2.4	0.8773
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	3.2	0.9167
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10011488 [exp]	6.2	0.9093
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	8.5	0.8915
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10003005 [exp]	9.4	0.8622
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10036967 [exp]	9.5	0.8688
AT1G53430			Leucine-rich repeat transmembr...		Lus10017953 [exp]	9.8	0.8564
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10004076 [exp]	13.0	0.8482
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	15.3	0.8584

Compare expression of checked genes

Lus10009327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.