Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66630 42 / 0.0002 DAR5 DA1-related protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000834 [exp] 239 / 2e-81 ND / Lus10009328 [exp] 174 / 6e-55 AT3G50470 79 / 4e-18 INTRACELLULAR MILDEW A 10, homolog of RPW8 3 (.1) Lus10000835 [exp] 150 / 5e-46 AT3G50470 51 / 5e-08 INTRACELLULAR MILDEW A 10, homolog of RPW8 3 (.1) Lus10000836 [exp] 117 / 4e-33 AT3G50470 52 / 2e-08 INTRACELLULAR MILDEW A 10, homolog of RPW8 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G038600 [exp] 52 / 2e-08 AT3G50470 76 / 4e-17 INTRACELLULAR MILDEW A 10, homolog of RPW8 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05659 [flax] [poplar] RPW8 Arabidopsis broad-spectrum mildew resistance protein RPW8
Representative CDS sequence Show only first row Show all	>Lus10009329 pacid=23148876 polypeptide=Lus10009329 locus=Lus10009329.g ID=Lus10009329.BGIv1.0 annot-version=v1.0 ATGGGTGGGTTTCGATGGGTACCCAAATACTGGGTTGGCATCATCGTTCGGTATGCCACCATAAGAAAGAGGCTAGATTCATTGGCTGGGAAATTGGAGG AGCTGATCAGCAAGTTCAAGGGCTTCGACGAACGCTACCCGAACATTGGTCTGAAACCAGAGACCCTCAGACTCCGAGAGCTGCTCGAGAAAGCCAAAGC GCTCGTCAGGGACTGCGCGAGGATTCGCTGGTGGAAGCTCAGGTTGATGCGCAAGTGCTCGAAGCGATTGGACACCCTAAATGAGTCGTTTGAGGATTTC TTGAGAATAAATTTACAGATTGCTCAGTACGACCACATCCTAAGAATTGAGCATTTGATGGTTTGGAAGAACCGGAAGTTGGACCATATGTACGTGAAAA AGGCCGCCCCTTTTACGCCGCCCTATGACCAAAGTTACGGCGGCGCCGACAACGAAAAAACGGCGTTTCTTGGAAATCATGAACACTCGGGCTTGCGGAG CGAGTTTTATTACGAGAGGAGGAAGAAGCATAGAGTCAAATTAAGCTTCTGCTTCAGCTACTGTTATGATAACGGTCATGACGATTAA
AA sequence Show only first row Show all	>Lus10009329 pacid=23148876 polypeptide=Lus10009329 locus=Lus10009329.g ID=Lus10009329.BGIv1.0 annot-version=v1.0 MGGFRWVPKYWVGIIVRYATIRKRLDSLAGKLEELISKFKGFDERYPNIGLKPETLRLRELLEKAKALVRDCARIRWWKLRLMRKCSKRLDTLNESFEDF LRINLQIAQYDHILRIEHLMVWKNRKLDHMYVKKAAPFTPPYDQSYGGADNEKTAFLGNHEHSGLRSEFYYERRKKHRVKLSFCFSYCYDNGHDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66630		DAR5	DA1-related protein 5 (.1)		Lus10009329 [exp]	0	1
AT5G58400			Peroxidase superfamily protein...		Lus10030146 [exp]	3.6	0.7012
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004347 [exp]	5.1	0.7550
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10004988 [exp]	8.3	0.7344
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004438 [exp]	11.4	0.7203
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	12.7	0.7178
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042740 [exp]	12.9	0.7523
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	13.7	0.7162
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	14.7	0.7162
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	15.6	0.7162
					Lus10033096 [exp]	16.4	0.7162

Compare expression of checked genes

Lus10009329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.