Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71400 236 / 3e-66 AtRLP12 receptor like protein 12 (.1) AT3G05370 229 / 1e-63 AtRLP31 receptor like protein 31 (.1) AT4G13920 225 / 5e-62 AtRLP50 receptor like protein 50 (.1) AT3G11080 223 / 3e-61 AtRLP35 receptor like protein 35 (.1) AT5G27060 221 / 2e-60 AtRLP53 receptor like protein 53 (.1) AT3G11010 220 / 2e-60 AtRLP34 receptor like protein 34 (.1) AT3G05650 214 / 3e-58 AtRLP32 receptor like protein 32 (.1) AT1G45616 210 / 1e-56 AtRLP6 receptor like protein 6 (.1) AT1G35710 207 / 1e-55 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G71390 205 / 1e-55 AtRLP11 receptor like protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026415 [exp] 553 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10006825 [exp] 500 / 6e-163 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10003389 [exp] 495 / 4e-161 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 469 / 2e-150 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003387 [exp] 431 / 2e-136 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10004313 [exp] 401 / 8e-128 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10004310 [exp] 401 / 3e-127 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10002215 [exp] 377 / 9e-122 AT4G20140 202 / 7e-56 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10000228 [exp] 342 / 7e-109 AT3G05370 231 / 3e-66 receptor like protein 31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 411 / 2e-128 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 345 / 2e-104 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G120532 [exp] 288 / 1e-85 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.001G437700 [exp] 261 / 2e-74 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.012G008300 [exp] 258 / 6e-74 AT2G33060 332 / 5e-101 receptor like protein 27 (.1) Potri.012G030125 [exp] 256 / 2e-73 AT2G33060 330 / 2e-100 receptor like protein 27 (.1) Potri.001G389100 [exp] 258 / 4e-73 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.011G055000 [exp] 248 / 3e-70 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.012G013435 [exp] 247 / 1e-69 AT3G11080 367 / 6e-112 receptor like protein 35 (.1) Potri.012G020600 [exp] 246 / 1e-69 AT3G05660 372 / 2e-115 receptor like protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009330 pacid=23148900 polypeptide=Lus10009330 locus=Lus10009330.g ID=Lus10009330.BGIv1.0 annot-version=v1.0 ATGAAACCTTACACACTGGCATGGTCAGTATTATTACTGTTTATATCGATGGGCACCACCCATGTTCAATCGGTATCTGGCCGATGTCGTGAGGACCAGC AATCCCTGTTGCTGCTACTTAAACATGAACCCAATTTCCACCATTCATCATCACAACAAAAGCTTGCCGGGTGGAATGCGAGCACTGACTGCTGTGATTG GCCTGGTATAAGATGTGATCATGGTGGCCTCGGTCGTGTTATCAGTCTGGATTTGAGCAATAAATCGATCTTAGGAGGATTCAAAAACTCAACGGCTCTC TTCAGTCTTCAATATCTCGGGTACTTGGACTTGTCTAATAACTATTTTGAGACAACTATTCCCCGTGCACTTGCCAACCTTACCAACTTGAGGTATCTTA ATTTATCCAATTCTTGGTTTTACGGGCAAACCATCTCTCGGTTGACAAACTTGGTTAGCCTTGATTTGGGCGGTAGTGAGGTAATATTTCGGCGCCTCGA ACTTGAGAACCCAAACTTGGCTGTACTAGTTCAGAATCTTACACAACTTACTCACCTACGACTTGATTTCATGGACCTTTCATCCCAAGACAAGGACTGG TCTCAGGCCTTGTCTTCTTCATTGCCAAACCTCCAAGTGTTGAGCATGTCACACTGCTTTCTTTCAATATTCCCTACTGATCCCTCCCTCTTAAAGCTTC AGTCTCTCTCGGTAGTTCGACTCGATTACAACTTCTTCTCATCTACAGTTCCCGAATTCTTTGCGGACCTGAAAAACTTGGCCATCCTGAATTTGACCAA TTGCGGTCTGACAGGAACATTTCCTGCAAAGATCTTTCAAATCCTGAGCCTCGAGCTTATTGACTTTTCGTATAACTCACTTCTTAAAGGGGCCTTACCA TACTTCCCTCAGAATCATTCCATGGCGATTCTAAAACTCCAAGACACAAACTTCGGAGGCGTCTTGCCACCATCCATGGGCAATCTTGGAAACTTATCAT GGGTAGATGTTTCAAAATGCAACTTCGGTGGATCGATTCCAAAGACACTAGACAGCCTTGCTCGACTAGAGTATTTGAATCTCTCATTCAAAAATTTCAG AGGTCTAATCCCGCCATCACTAGGCTTCGTCTCACGAAATCTTGTGCACATAGACTTGTCAAACAATCAGTTAGAGGGCCCCATCCCTCATTCAATTTTC GAGCTTGGGAGACTCAGAAGCCTCTCACTTTCATCCAATAGGTTAAGTGGAGATGTACAATGGAGCTCGATTCCAAAGCTCCAAACTCTTTCCATCCTTG ATCTCTCATACAACAACTTGACCGTGGTGCAAGAGGCAACCAATTTTTCAAACGACAACTACTCTACCTTGTCGTTCGAGAAATTGCTACTAGCATCGTG CAATCTGAGAAAGATTCCAGAGTTGGGCTATCAATCAAGGCTAACAGTTCTGGATCTTTCTGATAATAACATCGATGGGGTGGTGCCTGGTTGGATTCTG GTGTCAACTGGTCTATACTATCTCAACCTTTCTCACAACAACCTAGTAAGATTCGACGTACAACACGCTTCTCTTCCTAGCCTTCGTATTCTGGACTTGC ATGACAACCAATTACGAGGGAATATTCCAAGTATTTGGGATGAGGAAGGTTCCATATATTCATTATATTCTGGACTTGAATATCTGGATTACTCCCACAA TCTATACAACGGCTCATTTCCATCTGAAATACTATATCTCAAGTCCCTAACCTTCTTGTCAATATCTACCAATGACATCAGAGGTACTTTTCCAGACAGT AGAGTCTATTCTTCTCCATACTTGCAAGTCCTTGATTTTTCAAGTAACAATTTTCATGGCTCCTTACCGCAAGAGTGCTTCAAAGAACTTATAGCACTCA AAATTCTCAACCTCTCCCACAATGTTTTCACTGGCCCAGTCCCGTCAAATATTAGCAAATCGTTAGCATTGGAGTCTGTCGATCTCTCTCATAACTATTT CAGCGGACAAATCCCAAAGGAGCTGGCAAGTCTTGAACACCTTTCGTTCCTGAATCTGTCAGATAACAATCTAGTAGGATGCATCCCAGTCGGCACTCAG TTCCAAAAATTTGACAACAGTTCATTTGGAGGTAATCCACACTTGTGTGGGCGCCCTTTGACCAAATCTTGCACTTCTCCACGATTTAACTGGAATTTTC TAAGCAAAGCGTTCGGATATGTCTTCGGCTTAGCTGCAGTCATGTTGCCAGCCGCGTTATGGCCAGGTTTCCGTGTTTGGTACTGGGCGAAGATCGATTC TGTAATCCTTTGGATGTTCCCGAAGTTATACGTGAAAGATTGGAATACTCGACTCAGGCAAAGGAGAAGGCGACTACGTAGCAAGCAGACTATGACAGGC CGGTGA
AA sequence Show only first row Show all	>Lus10009330 pacid=23148900 polypeptide=Lus10009330 locus=Lus10009330.g ID=Lus10009330.BGIv1.0 annot-version=v1.0 MKPYTLAWSVLLLFISMGTTHVQSVSGRCREDQQSLLLLLKHEPNFHHSSSQQKLAGWNASTDCCDWPGIRCDHGGLGRVISLDLSNKSILGGFKNSTAL FSLQYLGYLDLSNNYFETTIPRALANLTNLRYLNLSNSWFYGQTISRLTNLVSLDLGGSEVIFRRLELENPNLAVLVQNLTQLTHLRLDFMDLSSQDKDW SQALSSSLPNLQVLSMSHCFLSIFPTDPSLLKLQSLSVVRLDYNFFSSTVPEFFADLKNLAILNLTNCGLTGTFPAKIFQILSLELIDFSYNSLLKGALP YFPQNHSMAILKLQDTNFGGVLPPSMGNLGNLSWVDVSKCNFGGSIPKTLDSLARLEYLNLSFKNFRGLIPPSLGFVSRNLVHIDLSNNQLEGPIPHSIF ELGRLRSLSLSSNRLSGDVQWSSIPKLQTLSILDLSYNNLTVVQEATNFSNDNYSTLSFEKLLLASCNLRKIPELGYQSRLTVLDLSDNNIDGVVPGWIL VSTGLYYLNLSHNNLVRFDVQHASLPSLRILDLHDNQLRGNIPSIWDEEGSIYSLYSGLEYLDYSHNLYNGSFPSEILYLKSLTFLSISTNDIRGTFPDS RVYSSPYLQVLDFSSNNFHGSLPQECFKELIALKILNLSHNVFTGPVPSNISKSLALESVDLSHNYFSGQIPKELASLEHLSFLNLSDNNLVGCIPVGTQ FQKFDNSSFGGNPHLCGRPLTKSCTSPRFNWNFLSKAFGYVFGLAAVMLPAALWPGFRVWYWAKIDSVILWMFPKLYVKDWNTRLRQRRRRLRSKQTMTG R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10009330 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007830 [exp]	4.0	0.6690
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	5.0	0.7353
AT4G34770			SAUR-like auxin-responsive pro...		Lus10016914 [exp]	5.1	0.5816
					Lus10033096 [exp]	7.1	0.7353
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	8.7	0.7353
AT5G36930			Disease resistance protein (TI...		Lus10014303 [exp]	9.5	0.7338
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	10.0	0.7353
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	12.2	0.7283
AT3G44150			unknown protein		Lus10021005 [exp]	13.2	0.7249
AT4G35160			O-methyltransferase family pro...		Lus10018526 [exp]	14.0	0.6950

Compare expression of checked genes

Lus10009330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.