Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66880 585 / 0 SNRK2-3, SNRK2.3, SRK2I SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) AT4G33950 585 / 0 ATOST1, P44, SRK2E, SNRK2-6, SnRK2.6, OST1 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) AT3G50500 574 / 0 SPK-2-2, SNRK2-2, SNRK2.2, SRK2D SNF1-RELATED PROTEIN KINASE 2-2, SNF1-related protein kinase 2.2 (.1.2) AT1G10940 488 / 5e-174 ASK1, SNRK2-4, SNRK2.4, SRK2A SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) AT1G60940 480 / 8e-171 SNRK2-10, SNRK2.10, SRK2B SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) AT5G08590 479 / 1e-170 ASK2, SNRK2-1, SNRK2.1, SRK2G ARABIDOPSIS SKP1-LIKE1, ARABIDOPSIS SERINE/THREONINE KINASE 2, SNF1-related protein kinase 2.1 (.1) AT5G63650 476 / 2e-169 SNRK2-5, SNRK2.5, SRK2H SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) AT1G78290 462 / 4e-164 SRK2C, SNRK2-8, SNRK2 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) AT4G40010 446 / 2e-157 SNRK2-7, SNRK2.7, SRK2F SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, SNF1-related protein kinase 2.7 (.1) AT2G23030 444 / 5e-157 SNRK2-9, SnRK2.9 SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNF1-related protein kinase 2.9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019641 [exp] 658 / 0 AT5G66880 577 / 0.0 SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) Lus10020997 [exp] 582 / 0 AT4G33950 637 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10027931 [exp] 553 / 0 AT4G33950 603 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10040179 [exp] 499 / 9e-179 AT4G33950 516 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10004382 [exp] 499 / 1e-178 AT4G33950 518 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10012050 [exp] 484 / 9e-173 AT4G33950 553 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10004748 [exp] 481 / 1e-171 AT4G33950 497 / 5e-178 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10023855 [exp] 481 / 3e-171 AT4G33950 531 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10007833 [exp] 480 / 3e-171 AT4G33950 496 / 2e-177 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G134400 [exp] 600 / 0 AT5G66880 600 / 0.0 SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) Potri.009G106900 [exp] 587 / 0 AT4G33950 600 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.004G145500 [exp] 585 / 0 AT4G33950 624 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.003G084100 [exp] 499 / 1e-178 AT4G33950 527 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.004G218200 [exp] 490 / 1e-174 AT1G60940 593 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Potri.002G099700 [exp] 483 / 3e-172 AT1G78290 523 / 0.0 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.003G015400 [exp] 483 / 6e-172 AT1G10940 583 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) Potri.007G096400 [exp] 481 / 2e-171 AT4G33950 514 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.004G138300 [exp] 480 / 4e-171 AT1G10940 577 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) Potri.T011000 [exp] 479 / 1e-170 AT5G63650 583 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009332 pacid=23148916 polypeptide=Lus10009332 locus=Lus10009332.g ID=Lus10009332.BGIv1.0 annot-version=v1.0 ATGGATCGGTCGTCGGTGATGGTTGGTGCAGGGATGGATATGCCGATCATGCACGACAGCGACCGCTACGACTTCGTCAGGGATATTGGGTCTGGGAACT TCGGGGTTGCTAGGTTGATGCGGGACAAGGTCACCAAGGAGCTCGTCGCTGTCAAATACATCGAGCGTGGAGATAAGATTGATGAGAACGTTCAAAGGGA AATCATTAATCATAGGTCTCTGAGGCATCCCAACATTGTGAGGTTTAAAGAGGTCATCCTGACACCTACTCATCTGGCAATCGTTATGGAATATGCATCC GGTGGAGAGCTCTTTGAGCGAATATCCAGTGCTGGCCGTTTCGGTGAGGATGAGGCTCGCTTTTTCTTCCAACAACTGATTTCCGGGGTTAGCTATTGCC ATGCTATGCAAGTGTGTCACCGTGATTTGAAGTTGGAGAATACATTGTTAGATGGAAGCCCTGCTCCTCGGTTAAAAATTTGTGATTTTGGGTACTCAAA GTCATCGGTGCTTCATTCACAACCAAAGTCTACTGTGGGAACTCCTGCTTATATTGCTCCTGAAGTTCTGTTAAGGCAAGAATATGATGGAAAGGTTGCG GATGTGTGGTCTTGCGGAGTCACCTTATATGTGATGCTGATCGGTGGATATCCCTTCGAGGATCCTGAAGAGCCCAAAGATTTCAGGAAGACCATACAAA GAATTCTTAGTGTTCAATATACCATTCCGGACACTATTCACCTCTCTCAAGAGTGCCGCGACCTCATAGCCAGGATTTTCGTCTTCGATCCAGCTACTCG GATTACAATTCCTGACATCAAGAACCATGTATGGTTTCTGAGGAACCTCCCGGCAGACCTGATGGACGAAAGGACGATGGGTAACCAGTTTGTTGAGGCC GACCAACCCCTCCAGAGCGTGGACACGATCATGCAGATAATCTCGGAGGCCACCATACCGCCAGCTGGCTCGCAGCGTCTTAACCAATACATGGCGGACA ACCTGGACATCGACGATGACATGGAGGACTTGGACTCGGAATCTGAGCTCGATATTGACAGCAGCGGGGAGATTGTCTATGCATTATGA
AA sequence Show only first row Show all	>Lus10009332 pacid=23148916 polypeptide=Lus10009332 locus=Lus10009332.g ID=Lus10009332.BGIv1.0 annot-version=v1.0 MDRSSVMVGAGMDMPIMHDSDRYDFVRDIGSGNFGVARLMRDKVTKELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYAS GGELFERISSAGRFGEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKVA DVWSCGVTLYVMLIGGYPFEDPEEPKDFRKTIQRILSVQYTIPDTIHLSQECRDLIARIFVFDPATRITIPDIKNHVWFLRNLPADLMDERTMGNQFVEA DQPLQSVDTIMQIISEATIPPAGSQRLNQYMADNLDIDDDMEDLDSESELDIDSSGEIVYAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Lus10009332 [exp]	0	1
AT5G66780			unknown protein		Lus10014313 [exp]	2.0	0.8159
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Lus10019641 [exp]	8.9	0.7221
AT1G55265			Protein of unknown function, D...		Lus10039182 [exp]	10.5	0.7987
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10029002 [exp]	11.2	0.6997
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	55.1	0.7135
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10036981 [exp]	56.3	0.7042
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033254 [exp]	83.4	0.6309
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10028172 [exp]	225.0	0.6112
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10011231 [exp]	241.9	0.6180

Compare expression of checked genes

Lus10009332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.