Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19080 215 / 2e-66 SWIB complex BAF60b domain-containing protein (.1) AT1G49520 176 / 6e-52 SWIB complex BAF60b domain-containing protein (.1) AT4G22360 150 / 4e-42 SWIB complex BAF60b domain-containing protein (.1) AT2G35605 84 / 7e-20 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 81 / 2e-18 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 72 / 4e-15 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 71 / 9e-15 SWIB/MDM2 domain superfamily protein (.1) AT1G31760 68 / 3e-14 SWIB/MDM2 domain superfamily protein (.1) AT4G26810 56 / 6e-10 SWIB/MDM2 domain superfamily protein (.1.2) AT3G48600 50 / 6e-07 SWIB complex BAF60b domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019640 [exp] 348 / 8e-119 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10014892 [exp] 123 / 1e-31 AT4G22360 243 / 2e-76 SWIB complex BAF60b domain-containing protein (.1) Lus10016581 [exp] 94 / 4e-21 AT4G22360 190 / 1e-55 SWIB complex BAF60b domain-containing protein (.1) Lus10013893 [exp] 67 / 2e-13 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10005667 [exp] 66 / 3e-13 AT3G03590 118 / 4e-35 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 57 / 1e-10 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10038799 [exp] 50 / 6e-07 AT4G26810 160 / 1e-50 SWIB/MDM2 domain superfamily protein (.1.2) Lus10033312 [exp] 45 / 9e-06 AT2G35605 68 / 6e-16 SWIB/MDM2 domain superfamily protein (.1) Lus10034774 [exp] 45 / 9e-06 AT2G35605 68 / 6e-16 SWIB/MDM2 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G134500 [exp] 287 / 1e-95 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.009G106700 [exp] 171 / 3e-50 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.004G145200 [exp] 169 / 3e-49 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.007G039350 [exp] 147 / 1e-43 AT3G19080 118 / 4e-32 SWIB complex BAF60b domain-containing protein (.1) Potri.006G010700 [exp] 133 / 1e-35 AT4G22360 303 / 2e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.016G013400 [exp] 130 / 1e-34 AT4G22360 301 / 1e-99 SWIB complex BAF60b domain-containing protein (.1) Potri.013G070600 [exp] 78 / 2e-17 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1) Potri.001G297400 [exp] 76 / 9e-17 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 74 / 7e-16 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.015G137600 [exp] 49 / 2e-07 AT4G26810 181 / 1e-60 SWIB/MDM2 domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08766 [flax] [poplar] DEK_C DEK C terminal domain PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Lus10009333 pacid=23148901 polypeptide=Lus10009333 locus=Lus10009333.g ID=Lus10009333.BGIv1.0 annot-version=v1.0 ATGGTGTCAGACTCAGAGCTCATAGAGAGGCTGCGGGAGTTCCTCAAGACATCGGACCTCGAGACGACGACCACCACCCTCGTCCGGCGGAAGCTGGAGG AGGATTTCGGGGTCAATTTGTCCGATAAGAAGGCCTTCATCAGGGAACAGGTCGACTTGTTCCTCCAATCTCAGTTGGAGGAAGTGGCCGAAGGCGACGG CGGGGATGATGATCGGAAGTCAGAAGGCGGCGATGAGGTGGAGGAGGAAGAGGAAGAGGCCGATGAGGAAGAAGAAGAACAAGAAGAAGAAGGAGCTCGG CGATCGAGTAGACGGAAGCCTCGTGCGAAAGGCAGGTCTAAAAAGCCGGCCGAAGAAGGAAAAAAGAGAGGAGGAGGGGGTGGGTTTACCAAAATATGTG GCCTTTCCCCTCAACTGCAGGAGTTTGTTGGCGCTCTTGAAATGGCCAGAACAGAAGTGGTAAAGAGAATATGGTCTTACATTAGAGAGAAAGATTTGCA AGAGCCCAGCAATAGGAGAAACATATTATGTGACGAACCTTTGCGCGCCCTTTTCCATGTGGACTCAATCAACATGTTTCAAATGAATAAAGCCCTTGCT AAGCATATATGGCCGCTGGATTCAGATGACGTTCTTCCGGCCAAGCCAGCACCAAAGGAGAAGCAAAAGAAGCAAGAGAGAGACGAAGAACCTGATGATT CTGGAAGGAAAGAGAAACGGCAGAAAGGAGGAACTTCAGGGTTTATGGCCCCTCTTCAGCTTTCGGAGCCTCTTGTAAAGTTCCTAGGCACTGGTGAAAG TGCATTGTCTAGAGCTGAGGTTGTCAAAAGAATGTGGGACTATATTAAGCAGAACAACCTCCAGGATCCATCTGATAAGAGGCAAGTGATATGCGACGAG AAGCTGAAAGAACTGTTTGATCTCGACACCTTCACGGGATTCACGGTATCGAAACTTCTATCTGCTCATTTCGTGAAGACTTGA
AA sequence Show only first row Show all	>Lus10009333 pacid=23148901 polypeptide=Lus10009333 locus=Lus10009333.g ID=Lus10009333.BGIv1.0 annot-version=v1.0 MVSDSELIERLREFLKTSDLETTTTTLVRRKLEEDFGVNLSDKKAFIREQVDLFLQSQLEEVAEGDGGDDDRKSEGGDEVEEEEEEADEEEEEQEEEGAR RSSRRKPRAKGRSKKPAEEGKKRGGGGGFTKICGLSPQLQEFVGALEMARTEVVKRIWSYIREKDLQEPSNRRNILCDEPLRALFHVDSINMFQMNKALA KHIWPLDSDDVLPAKPAPKEKQKKQERDEEPDDSGRKEKRQKGGTSGFMAPLQLSEPLVKFLGTGESALSRAEVVKRMWDYIKQNNLQDPSDKRQVICDE KLKELFDLDTFTGFTVSKLLSAHFVKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19080			SWIB complex BAF60b domain-con...		Lus10009333 [exp]	0	1
AT1G03910			unknown protein		Lus10021530 [exp]	1.0	0.9697
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	3.9	0.9603
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	4.0	0.9638
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Lus10008766 [exp]	6.5	0.9331
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	7.5	0.9541
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	8.8	0.9473
AT5G43830			Aluminium induced protein with...		Lus10006624 [exp]	9.0	0.9209
AT1G09740			Adenine nucleotide alpha hydro...		Lus10015896 [exp]	10.0	0.9439
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	10.8	0.9496
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	11.3	0.9455

Compare expression of checked genes

Lus10009333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.