Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29860 460 / 2e-162 EMB2757, TAN TANMEI, EMBRYO DEFECTIVE 2757, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 59 / 2e-09 WD-40 repeat family protein / notchless protein, putative (.1) AT5G50230 57 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 55 / 3e-08 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 52 / 4e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52360 51 / 1e-06 Coatomer, beta' subunit (.1.2) AT3G15980 50 / 2e-06 Coatomer, beta' subunit (.1.2.3.4.5) AT3G49660 49 / 2e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G44530 49 / 4e-06 HIRA homolog of histone chaperone HIRA (.1.2) AT2G43770 48 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019636 [exp] 671 / 0 AT4G29860 477 / 4e-169 TANMEI, EMBRYO DEFECTIVE 2757, Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 57 / 9e-09 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 58 / 1e-08 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10039636 [exp] 56 / 2e-08 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 56 / 2e-08 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 55 / 3e-08 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 54 / 7e-08 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001301 [exp] 55 / 8e-08 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10002860 [exp] 52 / 3e-07 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G002100 [exp] 507 / 0 AT4G29860 523 / 0.0 TANMEI, EMBRYO DEFECTIVE 2757, Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G079600 [exp] 64 / 7e-11 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 58 / 3e-09 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 59 / 4e-09 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 58 / 4e-09 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 53 / 2e-07 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.019G096900 [exp] 51 / 5e-07 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 52 / 6e-07 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.003G056300 [exp] 51 / 1e-06 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.007G009500 [exp] 50 / 1e-06 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10009335 pacid=23148907 polypeptide=Lus10009335 locus=Lus10009335.g ID=Lus10009335.BGIv1.0 annot-version=v1.0 ATGAGCAAGAGACCGCCGCCGCCGCCTGATCCCATCGCAGTCCTGAGAGGCCACCGTGCCTCCGTCGCCGACGTCTGCTTCCATCCCTCTAAACCCATCT TGTTCACCGGCTCGTCAGACGGCGAATTGAGGATTTGGAGCACGGTCCAGCATCGAACACTGTCATCTTCATGGGCTCACAATGCTGCTCATGGGATCTT AACTGTTGCTTGCAGCTCTGCACATGGAGATAACAAAGTCATCAGCCAGGGAAGGGATGGAACTGTGAAGTGTTGGGATATTCAAGATGGTTCCCTCTCC AGGGCGCCCTCTGTTACAATCACGACTAATGCATACCACTTCTGCAAAATGTCGCTAGTCCAAACGCCTTCCACTGGTGGAGCTAGCATCCGTTATGATC GACAAGAGAAGGAGAATGTGGATGTGTTCCGAGACAGTGAAGAAGAATCAGAGTGCTCTAATACTGCAAAAGAGAACGGTCATTGCAGCACATCAGAGTG TATTGCTGTAGCAGGGGAGTTGGGTTCGGAGGTTGAGGTATGGGATCTTAAAAATGCGGAGAGGATTGTTCGGTTACCTGGAAACAACTCCAGTGGCTCT CCTAGTACTTCTTCCAGCAAGAGAGGAATGTGCATGTCAGTTCAGGCATTGAGTTCATATGGATTCCTGAATATCATGGCAGGGTATGAGGATGGTTCCA TGCTTTTGTGGGATATACGTAGTCCTCACGAACCTCTTTCATCTGTGAAGTATCACTCTGAGCCAGTTTTAAGCTTATCCGTTGACGGATTGTGCTCTGG AGGGATCTCTGGATCTGCTGATGATAAGATTATGTTATTTAGTTTGGACACATCCATGGGTTCTTGTGTTATAAGGAAAGAGATCATCTTGGAGCGACCA GGCATATCCAGTACCTCAATTAGACCAGACCGGAAAATCTTCGCTACTGCTGGCTGGGACCACAGGATAAGGGTATACAACTACAGGAAAGGAAATGCAT TGGCGATATTGAAGTATCACAAAGCCACTTGTAATGCTGTGGCGTATTCACTGGATTCGAAGCTTTTGGCGTCTGCTTCGGAAGATTCGACAATTGCTCT TTGGGAACTGTATCCCCCATCAACCATCATGTAA
AA sequence Show only first row Show all	>Lus10009335 pacid=23148907 polypeptide=Lus10009335 locus=Lus10009335.g ID=Lus10009335.BGIv1.0 annot-version=v1.0 MSKRPPPPPDPIAVLRGHRASVADVCFHPSKPILFTGSSDGELRIWSTVQHRTLSSSWAHNAAHGILTVACSSAHGDNKVISQGRDGTVKCWDIQDGSLS RAPSVTITTNAYHFCKMSLVQTPSTGGASIRYDRQEKENVDVFRDSEEESECSNTAKENGHCSTSECIAVAGELGSEVEVWDLKNAERIVRLPGNNSSGS PSTSSSKRGMCMSVQALSSYGFLNIMAGYEDGSMLLWDIRSPHEPLSSVKYHSEPVLSLSVDGLCSGGISGSADDKIMLFSLDTSMGSCVIRKEIILERP GISSTSIRPDRKIFATAGWDHRIRVYNYRKGNALAILKYHKATCNAVAYSLDSKLLASASEDSTIALWELYPPSTIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Lus10009335 [exp]	0	1
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10041720 [exp]	2.6	0.8443
AT4G30310			FGGY family of carbohydrate ki...		Lus10001312 [exp]	12.1	0.8071
AT1G11050			Protein kinase superfamily pro...		Lus10018860 [exp]	13.0	0.7955
AT1G78090		ATTPPB	Arabidopsis thaliana trehalose...		Lus10019010 [exp]	15.6	0.7327
AT2G26210			Ankyrin repeat family protein ...		Lus10034882 [exp]	26.8	0.7657
AT5G27950			P-loop containing nucleoside t...		Lus10018999 [exp]	41.7	0.7749
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10034259 [exp]	46.6	0.7805
AT5G45290			RING/U-box superfamily protein...		Lus10001683 [exp]	73.4	0.7103
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	75.6	0.7490
AT2G25280			unknown protein		Lus10001925 [exp]	127.5	0.7456

Compare expression of checked genes

Lus10009335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.