Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66860 269 / 3e-91 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) AT4G23620 139 / 2e-40 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019634 [exp] 401 / 2e-143 AT5G66860 293 / 8e-101 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Lus10000590 [exp] 126 / 3e-35 AT4G23620 329 / 2e-114 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2) Lus10011005 [exp] 124 / 4e-34 AT4G23620 328 / 4e-114 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135000 [exp] 311 / 1e-107 AT5G66860 320 / 5e-111 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Potri.007G039700 [exp] 305 / 2e-105 AT5G66860 315 / 4e-109 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Potri.001G097801 [exp] 133 / 8e-38 AT4G23620 320 / 4e-111 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009338 pacid=23148893 polypeptide=Lus10009338 locus=Lus10009338.g ID=Lus10009338.BGIv1.0 annot-version=v1.0 ATGGCAAAGTATTGGCGCGGACTTAAAACGGCGGCGAAGTTCACTCCGCCTCCGCCGTCCCCTCTCTACTCCCAGTCCCAGACCTCTCTCTACCACACGA TTCAAGCGATTCCCCGTGAAGCCACCGGAAGCCGAGTCTCGGATCGAGACAGAGCTCAAGGTAGGATCCCGGCCGTGGTTTTCTCCCAGAGCATCCTCGA TAAGAGCCCTAACTCTCGTTCCGCGTCGAGGAAGCGGCTGTTGACGACGGAGAAGAAGCAGATTCAGTCCATCTTGAAGTCACTCGATTCTCCCTATTTC TGCTCTACCACGTTTCCTCTCCAGATTCGGGCCGGATCCGGGTCATCCGTGTTGCTCGAGTCCGGGAATGTCCTTCCTGTTAAGGTACATAGAGATAAAG AGACTGGAAAGATTATGAACTTGGTGTTTGTTTGGGCTGATCCAGGCACTGAAGTGAAAGTTGACGTGCCGGTTGTTTTCAAAGGTGAAGAGAATTGCCC TGGTCTACTGAAAGGTGGCCGGTTGAACCGTTTAAGAGATACCCTCAAGCTACTATGCCCTGTTGAAAACATCCCTCAAAAGATCGAGGTGGACCTGAGC AAACTAGACATTGGAGAAAGAGTAACGGTGCATGATTTCAATATCGATCCATCACTGAAGCTTCTCACCAAGGACGAGTCCCTCCCTGTATGTAAGGTCG TTTCAACAAACTCGAAAGCATCAGAGCCTGTTTCGGCATAG
AA sequence Show only first row Show all	>Lus10009338 pacid=23148893 polypeptide=Lus10009338 locus=Lus10009338.g ID=Lus10009338.BGIv1.0 annot-version=v1.0 MAKYWRGLKTAAKFTPPPPSPLYSQSQTSLYHTIQAIPREATGSRVSDRDRAQGRIPAVVFSQSILDKSPNSRSASRKRLLTTEKKQIQSILKSLDSPYF CSTTFPLQIRAGSGSSVLLESGNVLPVKVHRDKETGKIMNLVFVWADPGTEVKVDVPVVFKGEENCPGLLKGGRLNRLRDTLKLLCPVENIPQKIEVDLS KLDIGERVTVHDFNIDPSLKLLTKDESLPVCKVVSTNSKASEPVSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	0	1
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	2.4	0.9666
AT2G40290			Eukaryotic translation initiat...		Lus10017435 [exp]	3.2	0.9608
AT5G60960		PNM1	PPR protein localized to the n...		Lus10034673 [exp]	3.5	0.9624
AT3G05130			unknown protein		Lus10000927 [exp]	4.0	0.9527
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10034549 [exp]	4.7	0.9543
AT2G15000			unknown protein		Lus10026596 [exp]	4.9	0.9533
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	5.2	0.9575
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	5.5	0.9621
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10022510 [exp]	5.8	0.9525
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	5.9	0.9581

Compare expression of checked genes

Lus10009338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.