Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66850 545 / 0 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G63700 334 / 2e-102 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 318 / 4e-99 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G09000 246 / 2e-71 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 239 / 1e-69 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT4G08500 234 / 1e-67 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT3G06030 230 / 6e-66 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08470 220 / 4e-63 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 222 / 5e-62 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT3G07980 216 / 1e-58 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019635 [exp] 1097 / 0 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10022461 [exp] 676 / 0 AT5G66810 756 / 0.0 unknown protein Lus10016768 [exp] 486 / 4e-165 AT5G66850 460 / 3e-155 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10021766 [exp] 445 / 7e-145 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10032279 [exp] 348 / 8e-108 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 348 / 1e-107 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 340 / 2e-105 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 342 / 4e-105 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10038858 [exp] 309 / 6e-94 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135100 [exp] 618 / 0 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.007G039800 [exp] 603 / 0 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 447 / 1e-146 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 435 / 2e-142 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.015G146700 [exp] 344 / 4e-106 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 342 / 3e-105 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 342 / 4e-105 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 338 / 1e-103 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 316 / 4e-98 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G106800 [exp] 305 / 4e-94 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009339 pacid=23148890 polypeptide=Lus10009339 locus=Lus10009339.g ID=Lus10009339.BGIv1.0 annot-version=v1.0 ATGCGCTGGCCAAACCTATCCTTCTCTTTAAATTCCTTCTCCGCTCGTTCCGCTTCCGTAACCTCTCCTAAACCTTCCTCCTCTTGCTCCGGCGCCGACG AGGCGTCGCCATCGCCTGCGCTTCACAACAAGAACAACAATAAGAAGCACCATGGCCCGCCGAGCCTCGCCCCTAGCCACACGTTTGGATTCCGCCTCCG TTCCAGCTCCACCGGCATGCCCAAGCTCACCCGCCAGAAAAAGCTCCGACACCTAAGCGACAGGGATGTTTTCTCCGACGAGATCTCTTACGAGCCTGAG CTCTCCCGCTCTAAGAGCGCTTCCTCGTCTCCGAGCCGGTCCGTCACCGCTCCTCTCCCGGTTCCTCTTCCGTTGCCTCAGCCTTCCAATCCCGGCGAGG CGGACTCGCGGTTGCGGTCTCCGAAGGAGAAGAGCAATGGTGATGGAATCGGGATCTCATTCTCCGCTTCCGCTCCTTCCAGTGTATTGGGAGGGCGAGA AACAAAGATGGCAACAGAACAACACCAGGAAACAAGATCAGGGAGAGCATCAGTAGGTCTTGATTTGAACAATTTCGGGCTTAACAATGGTGCTAAGACT TCATCCAATAGTCCATACGCAAGTCCTGAAGTCAGCCCACAGAGATTAATGTACGTTTTTACCACGTCCCCTTACATAAACCAGATTCCTGGAGGGATCC AAGCTTGGTCTGCACCGGAGATGCCTACACTAGACATACCAGGGCTACCCCCTCCAGCGTTTTTCGATTTCACAGCACATACTAGCAGTGATAGTTCTTC TTCACCTCTTCATAATAACCCGATGGCGGCGAATCGAAGTCCTCGGTCTCCTGTGACTGCTAGAACATCATTTGAGATCATCCCAACGGGTAGGCGTGAC AACAACAGCAGTGGAAATGTCGAGGTCCACAAATTACCCCTTCCTCCTGGAGCAAATCTCATATCTCCGACTTCGTTGTCGACTCCTCCTCTTATTCCTC CTGTGGTTGCTGCTAAACAAGAGCCCGTACCCATGAAGAGCCAGTGGCAGAAGGGAAAGCTCATTGGGCGTGGAACATTCGGAAGTGTTTATGTCGCCAC CAACAGGGAAACTGGGGCATTATGTGCAATGAAGGAGGTTGATATGTTCCCTGATGATCCTAAATGTCGAGAGTGCATAAAGCAACTAGAACAGGAGATT AAAGTTCTAAGCAAGTTGAAGCATCCCAACATTGTGCAGTACTATGGTAGTGAAATAATTGAGGACCAGTTCTATATCTATTTAGAGTATGTTCATCCCG GTTCGATCAACAAATATGTCCGTGAACATTGTGGAGCAGTAACAGAATCCATTGTTCGTAGTTTTACTCGTCATATTCTATCCGGATTGGCATACTTGCA TACCATGAAGACAGTACATAGAGACATAAAAGGGGCAAATTTGCTCGTGGATGCATCTGGGGTTGTTAAGCTAGCCGATTTCGGGACGTCAAAACATCTT ACTGGACAAGCAGCTGAACTTTCATTGAAGGGGAGTCCTTACTGGATGGCACCAGAGCTTATGCAAGCTGTTATGCAGAAGGACAATAACTCTGATCTTG CACTCGCTGTCGACATTTGGAGCTTAGGCTGCACCATCATCGAAATGTTCACCGGTAAACCTCCTTGGAGTGAATATGAGGGTGCTGCTGCTATGTTTAG AGTCATTAAGGACACTCCACCAGTACCTGAGACATTGTCACCTGACGGCAAGGATTTCCTCTCCTGGTGCTTCAAAAGAAACCCTGCAGAGCGGCCCTCC GCTTGCTTGTTACTAGAGCACCGGTGGCTGAAACAGCTACCCGATGCTGCTGCTGCACCTCCTTCACCTACCCCGCAAATCAATGGCACCAAACCGATGG ACACTAGCCGCAGTATTAGGGTGAGCGACGTCAACACTAGAGGCAGTCCATTGACACAACTTCAAACCTCGCGAAGTTCGAAAGGAAAGGTGGTTCCAGA CAACAGACCCAAAAAGTCAGCAGAGAGGCAGTTTCAGATGGATCCACCAGCAGAACAGTCCATTGAGAGGAATTTGCAGGCTGGAGATGACACCCAAGAC CAAGCTATCAACGAATGCTGTTCTTGCTGCTATGATTGCTTTCAGGTCTGCCTGGATTTCATCTGCTGCTCAGACTAA
AA sequence Show only first row Show all	>Lus10009339 pacid=23148890 polypeptide=Lus10009339 locus=Lus10009339.g ID=Lus10009339.BGIv1.0 annot-version=v1.0 MRWPNLSFSLNSFSARSASVTSPKPSSSCSGADEASPSPALHNKNNNKKHHGPPSLAPSHTFGFRLRSSSTGMPKLTRQKKLRHLSDRDVFSDEISYEPE LSRSKSASSSPSRSVTAPLPVPLPLPQPSNPGEADSRLRSPKEKSNGDGIGISFSASAPSSVLGGRETKMATEQHQETRSGRASVGLDLNNFGLNNGAKT SSNSPYASPEVSPQRLMYVFTTSPYINQIPGGIQAWSAPEMPTLDIPGLPPPAFFDFTAHTSSDSSSSPLHNNPMAANRSPRSPVTARTSFEIIPTGRRD NNSSGNVEVHKLPLPPGANLISPTSLSTPPLIPPVVAAKQEPVPMKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVDMFPDDPKCRECIKQLEQEI KVLSKLKHPNIVQYYGSEIIEDQFYIYLEYVHPGSINKYVREHCGAVTESIVRSFTRHILSGLAYLHTMKTVHRDIKGANLLVDASGVVKLADFGTSKHL TGQAAELSLKGSPYWMAPELMQAVMQKDNNSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFRVIKDTPPVPETLSPDGKDFLSWCFKRNPAERPS ACLLLEHRWLKQLPDAAAAPPSPTPQINGTKPMDTSRSIRVSDVNTRGSPLTQLQTSRSSKGKVVPDNRPKKSAERQFQMDPPAEQSIERNLQAGDDTQD QAINECCSCCYDCFQVCLDFICCSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10009339 [exp]	0	1
AT4G31805			WRKY family transcription fact...		Lus10024451 [exp]	2.0	0.8568
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10026341 [exp]	3.7	0.8312
AT5G58300			Leucine-rich repeat protein ki...		Lus10039422 [exp]	7.5	0.8366
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	18.1	0.8517
AT5G45920			SGNH hydrolase-type esterase s...		Lus10000525 [exp]	19.2	0.8279
AT1G08845			Ribosomal L18p/L5e family prot...		Lus10001727 [exp]	21.9	0.8203
AT5G47530			Auxin-responsive family protei...		Lus10017564 [exp]	23.0	0.8354
					Lus10037130 [exp]	24.2	0.8360
AT1G71710			DNAse I-like superfamily prote...		Lus10028697 [exp]	28.0	0.8167
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10028476 [exp]	35.7	0.7725

Compare expression of checked genes

Lus10009339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.