Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37070 457 / 2e-160 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37050 455 / 3e-159 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT4G37060 446 / 3e-156 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT2G26560 409 / 2e-141 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT5G43590 373 / 2e-127 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT2G39220 115 / 4e-28 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT4G29800 110 / 2e-26 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT3G54950 109 / 4e-26 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT3G63200 100 / 3e-23 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000279 [exp] 621 / 0 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10019637 [exp] 621 / 0 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10028347 [exp] 136 / 2e-35 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10036526 [exp] 130 / 2e-33 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 128 / 1e-32 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10040394 [exp] 121 / 3e-30 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 111 / 1e-26 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10038349 [exp] 105 / 7e-25 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10022040 [exp] 66 / 6e-12 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G042200 [exp] 504 / 7e-179 AT4G37070 505 / 4e-179 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Potri.014G034000 [exp] 451 / 9e-158 AT2G26560 529 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.002G128000 [exp] 448 / 7e-157 AT2G26560 543 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033600 [exp] 446 / 1e-155 AT2G26560 535 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033900 [exp] 444 / 3e-155 AT2G26560 536 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134151 [exp] 441 / 3e-154 AT2G26560 509 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033200 [exp] 441 / 5e-154 AT2G26560 533 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133901 [exp] 439 / 2e-153 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134001 [exp] 439 / 2e-153 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134051 [exp] 439 / 2e-153 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Lus10009340 pacid=23148895 polypeptide=Lus10009340 locus=Lus10009340.g ID=Lus10009340.BGIv1.0 annot-version=v1.0 ATGGAGGAAGGAAGAACATCTTCACAACCAAACTATGGAAACCTTGTTACGATTCTGAGCATCGATGGAGGAGGGGTCAGAGGAATCATACCCGGAGTTG TTCTCGCCTATCTCGAGTCCGAACTTCAGAAGCTTGATGGGGAGAATGTGAGGATTGCAGATTACTTTGATGTGATCTCAGGGACAAGTGTAGGAGGGCT TATTGCAGCAATGATAGCTGCACCAAATGAGAAGAAGCGGCCACTTTTTGATGCCAAGGACATTGTCCCTTTCTACCTCCATCACTTTCCTAAAATATTC CCTCAAAACAGAGGTGCATTTGGATGGATGGTAAAGCTACGGAAAGCTCTAACAGGGCCACAATACGATGGGAAGTACCTGAGAAAGCTGCTAAGAACAA TGTTTGGGAGCTCAAAGCTCCATGAAGCAGTGACAAATGTCGCCATTCCAGCATTTGACATCAAGAAGCTCCAGCCTGTTATATTCTCTTCCTATCAGGT GGATAGAGATCCATCTCTAGATGCTAAGCTTGCAGACATATGCATATCAACTTCCGCAGCTCCAACATTTTTGCCTCCATATTACTTCAGGAACCATGGC TCAGATGGGAAGGTGAAAGAGTTCAACCTCATTGATGGTGCCATTGCTGCTGACAATCCTACTTTGGTTGCCATAAGGGAAGTGACCAAGCAAATAATGA AGAACCCGGGCGGGTGTTCGATCAAACCGGTCGAGTATGGGAAGTTTCTTGTGGTCTCGCTAGGGACAGGATCCAACAAGACTGAAGAGAAGTACGATGC TAAGACTGCTTCCAAATGGGGTGTCATAAGCTGGCTGTATTACAACGGCTCGTCTCCGTTGATCAGTTGCTATGGCGATGCCGGTTCGGACATGGTTGAT TACCACAACCGCGTGGTTTTCGAGGCTCTCGAATCCGAGGACAACTATCTCAGAATAGATGATGACAAGCTGCAAGGGGATGTGGTGTTCTTAGACTTGG CTACAGAGGAGAATCTGAAGAACCTTGTGGAACAAGGAAAGAAGCTGTTGAAGAGTGTCGTAGCTCGCCGAAACCTGGATACCGGTCGATATGAACCGGT CGGAGATGCCGGTACCAATGAAGAAGCACTTCAAAGGGTTGCTAAGTTACTCTCGGATGAACGAAAATATCGTCGGTCGCGATGCGAGGATTCAACTTAT GAATTATGA
AA sequence Show only first row Show all	>Lus10009340 pacid=23148895 polypeptide=Lus10009340 locus=Lus10009340.g ID=Lus10009340.BGIv1.0 annot-version=v1.0 MEEGRTSSQPNYGNLVTILSIDGGGVRGIIPGVVLAYLESELQKLDGENVRIADYFDVISGTSVGGLIAAMIAAPNEKKRPLFDAKDIVPFYLHHFPKIF PQNRGAFGWMVKLRKALTGPQYDGKYLRKLLRTMFGSSKLHEAVTNVAIPAFDIKKLQPVIFSSYQVDRDPSLDAKLADICISTSAAPTFLPPYYFRNHG SDGKVKEFNLIDGAIAADNPTLVAIREVTKQIMKNPGGCSIKPVEYGKFLVVSLGTGSNKTEEKYDAKTASKWGVISWLYYNGSSPLISCYGDAGSDMVD YHNRVVFEALESEDNYLRIDDDKLQGDVVFLDLATEENLKNLVEQGKKLLKSVVARRNLDTGRYEPVGDAGTNEEALQRVAKLLSDERKYRRSRCEDSTY EL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10009340 [exp]	0	1
AT3G61930			unknown protein		Lus10030203 [exp]	5.2	0.8805
AT2G26730			Leucine-rich repeat protein ki...		Lus10014525 [exp]	6.2	0.8239
AT5G23760			Copper transport protein famil...		Lus10001485 [exp]	11.8	0.8639
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10008968 [exp]	13.6	0.8772
AT2G44130			Galactose oxidase/kelch repeat...		Lus10016214 [exp]	19.0	0.8208
					Lus10022970 [exp]	25.1	0.8087
AT2G14095			unknown protein		Lus10035649 [exp]	26.5	0.8458
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10034336 [exp]	26.7	0.8553
AT5G63180			Pectin lyase-like superfamily ...		Lus10014887 [exp]	27.9	0.8256
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	29.4	0.8567

Compare expression of checked genes

Lus10009340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.