Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002965 [exp] 388 / 1e-134 ND / Lus10003602 [exp] 95 / 6e-21 ND / Lus10007176 [exp] 68 / 4e-13 ND / Lus10028108 [exp] 62 / 3e-11 ND / Lus10010583 [exp] 44 / 4e-05 ND 36 / 0.010 Lus10007786 [exp] 43 / 0.0003 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091800 [exp] 42 / 0.0005 AT5G37930 81 / 4e-16 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009341 pacid=23148894 polypeptide=Lus10009341 locus=Lus10009341.g ID=Lus10009341.BGIv1.0 annot-version=v1.0 ATGGCCCGAAGATCGAGATGCAGTCCGAAGAGGATAGTGACAATGCTCAATCATATAACTAAAGAGGACCTAGATTCCCTAGCTGAAGTAGGGTTTTCTG GTGTAATGAAGATCAAAATCACTAGAATGTCTGAGGAGTTCCTCAAGTGGGCAGTAGACCGCTACGAAGTCTCATCGAGATCGTTCATATTGGACGGGAA CAAAAGGTTCCGACTCACTGAAGATGATGTGGCAAGGGTGTATGGCCTACCACGAGGGCCGAATCACGTAGATCTCGATAAATATCCGACTTCCTTGCTG AAGGAATTAGGAGCGGAACTGAACATTGGAGATGACAAATCCGGGAAGGACAATGTAGAGCTTTTAGCGCTTAAGAAGAGAGTAACGGAGGAGTCAGATT TACTTAAGAGGAGGAAGTTGTTGATTTTGTACATAATGGGTGGACTACTTTGCCCGAACTCCCATCCGGTCGCTAACCTTGGCTACCTCCCGCTGTTGAG CGAACAGGTTCTGCCTGATTTCGGAAACTTTAACTGGTGCAGACATGTCGTTGACCACTTCCACAATGGCATGGTCGCTTCGAAGAAGAATAAGTATATT TGTGCAGACGTACACTTGTTGCTGGTTAGCATTTGTGAGCAACTGGGATCCGCAGGGAAGGCCTTATCAACGACAGGACCTTCTTGCGAAAACTGGGACA ACTCAACAGTGCAGAAAAGACTGGGCAAGTTAAAGGCCAAAAGAAGTTTGGATTCTGCAATGGAGTTGAAAAGGCAAGCGAAAAAACCGAGGTTCAACCT GTTACCAAATCATCACGCTGTTTTCCCTGGAACAACACTTGACTTGGAGAATTTGGATATGGACATGGCGTATACACTCAAGAATTGGTACGAGATGACA CGAGCTGCCTGCGAAAGCCATATTGCAACTTTGGACAACCACATTGCTCGATTAACCTATGAGGACACGACACCAATGCAGGGGAACGATAAAATCGTAG AACTTGAAGAAGAACGATTGGTATGCGAGAACAATAAGGTAAAAGATGAATCTATAGAACAAATGGATGTATTCAAAGAGACAACCGATGCTGATTTGGA GCTCAGTAACACTTTGCTCAGCATAAAAGATCCATACAACGTTAACAATGACGGTAATGTGAGAAAATTGATCGCGAAAAGGAAGCCGATCTCGTAA
AA sequence Show only first row Show all	>Lus10009341 pacid=23148894 polypeptide=Lus10009341 locus=Lus10009341.g ID=Lus10009341.BGIv1.0 annot-version=v1.0 MARRSRCSPKRIVTMLNHITKEDLDSLAEVGFSGVMKIKITRMSEEFLKWAVDRYEVSSRSFILDGNKRFRLTEDDVARVYGLPRGPNHVDLDKYPTSLL KELGAELNIGDDKSGKDNVELLALKKRVTEESDLLKRRKLLILYIMGGLLCPNSHPVANLGYLPLLSEQVLPDFGNFNWCRHVVDHFHNGMVASKKNKYI CADVHLLLVSICEQLGSAGKALSTTGPSCENWDNSTVQKRLGKLKAKRSLDSAMELKRQAKKPRFNLLPNHHAVFPGTTLDLENLDMDMAYTLKNWYEMT RAACESHIATLDNHIARLTYEDTTPMQGNDKIVELEEERLVCENNKVKDESIEQMDVFKETTDADLELSNTLLSIKDPYNVNNDGNVRKLIAKRKPIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009341 [exp]	0	1
AT2G34750			RNA polymerase I specific tran...		Lus10005693 [exp]	3.3	0.8767
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	6.0	0.8245
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	22.5	0.8362
AT5G49960			unknown protein		Lus10041011 [exp]	24.0	0.8073
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009398 [exp]	27.4	0.8283
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	93.5	0.7787
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10041056 [exp]	96.5	0.7662
AT1G20920			P-loop containing nucleoside t...		Lus10029986 [exp]	103.8	0.7695
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Lus10008061 [exp]	131.3	0.7568
					Lus10033677 [exp]	137.5	0.7587

Compare expression of checked genes

Lus10009341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.