Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50530 666 / 0 CRK CDPK-related kinase (.1.2) AT2G41140 582 / 0 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT3G56760 570 / 0 Protein kinase superfamily protein (.1) AT3G19100 551 / 0 Protein kinase superfamily protein (.1) AT1G49580 551 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G46700 511 / 5e-177 ATCRK3 CDPK-related kinase 3 (.1.2) AT5G24430 469 / 1e-160 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G49370 454 / 8e-155 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G17890 355 / 1e-116 CPK16 calcium-dependent protein kinase 16 (.1) AT4G36070 331 / 1e-107 CPK18 calcium-dependent protein kinase 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002966 [exp] 747 / 0 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10025270 [exp] 552 / 0 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10008875 [exp] 474 / 2e-162 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10023234 [exp] 473 / 2e-162 AT5G24430 742 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10041914 [exp] 296 / 2e-93 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 292 / 3e-93 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10038460 [exp] 273 / 4e-85 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10000889 [exp] 266 / 1e-82 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10036050 [exp] 265 / 5e-82 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135900 [exp] 689 / 0 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.007G040800 [exp] 688 / 0 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 597 / 0 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.004G143700 [exp] 594 / 0 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.006G040500 [exp] 593 / 0 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1) Potri.009G105700 [exp] 561 / 0 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.014G103500 [exp] 511 / 7e-177 AT2G46700 840 / 0.0 CDPK-related kinase 3 (.1.2) Potri.002G176700 [exp] 500 / 8e-173 AT2G46700 835 / 0.0 CDPK-related kinase 3 (.1.2) Potri.012G023300 [exp] 494 / 2e-170 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.005G113600 [exp] 288 / 6e-91 AT5G66210 870 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009342 pacid=23148918 polypeptide=Lus10009342 locus=Lus10009342.g ID=Lus10009342.BGIv1.0 annot-version=v1.0 ATGGGGCTGTGCACGTCGAAGCCGTCATCGCCGGACAGGAGCATACACGTATCGCATCAACAATCGGAGACTGGGCTTAGCTCGGCCGGTGCCGACGTTC CGCCGGATAACGGCGGCGGGGAGAGGCGGGGGCAGGGGGGGAGGAGCTCGAGCGCGGGTGGGCCGGGGGGGGAGGGGACTGCTAAGCATATACGAGCTGT TTTGGCGAGGAGGCATGGCTCTGTTAAGCCGAACGAGGCTTCGATCCCGGAAGGGAGTGAGGTGGATGGGATGGCTGCGCTTGATAAGAGCTTTGGGTTC TCTAAGCATTTTGGGAACAAGTACGAGCTGGGGGATGAGGTTGGAAGAGGGCATTTTGGATATACCTGTGCGGCTAAGTTCAAGAAGGGTGAGCTTAAAG GGCAGCAAGTTGCAGTCAAGGTCATCCCGAAAGCTAAGATGACCACAGCAATTGCAATTGAAGATGTGAGAAGGGAGGTCAAAATATTACGAGCTTTAAC TGGACATAGTAACCTAGTGCAATTCTATGATGCATATGAAGACGCCGATAATGTCTACATAGTAATGGAGTTGTGTGAAGGAGGGGAGCTGTTGGACAAA ATTCTTGCAAGCCCTTTCCTATATTCTGCAGATGAGAGATTGAATGATATCGTTGGGAGCGCATATTACGTAGCCCCTGAAGTCCTCCATAGATCGTATA GTACCGAAGCTGACGTCTGGAGCATAGGTGTGATTGCCTATATACTGTTATGCGGCAGCCGTCCCTTCTGGGCCCGGACAGAATCAGGTATCTTTAGGGC TGTTCTAAAAGCGGATCCAAGCTTTGATGAAGCACCTTGGCCATCTCTATCTCCCGAAGCTCGAGACTTTGTGAAGCGACTATTGAATAAAGACCCTCGT AAAAGATTAACTGCTTCCCAAGCGTTGAGCCACCCATGGATCAAAGATTCTAATGACGTAAAAGTGCCCCTAGATATACTAGTGTTCAAGCTAATGAAGG CTTATATGCGGTCATCATCTCTCCGTAGAGCTGCTTTGAGGGCTTTATCTAAAACATTGACTGTAGACGAGCTATTTTATTTGAAGGAGCAGTTTTCTCT GTTGGAACCGAACAAGAATGGCACGATAAGCTTGGACAATATCAAATCGGCCTTGCTGAAACATGCAACAGACGCTATGAAGGAATCTCGAATCCCTGAT TTCCTTGCATCACTGAATGCGCTTCAGTACAGACGAATGGACTTTGAGGAGTTCTGTGCAGCTGCATTGAGTGTCCATCAGCTCGAGGCTGTGGATCGGT GGGAGCAACATGCACGCTGTGCCTACGAACTTTTTGAGAAGGATGGAAACAGGGCCATCATGATTGAAGAACTTGCATCGTTGATTATTAACCGAGTACT GATCGTCTTTGCAGGAACTCGGCCTGAGCCCTTCTGTCCCGGTTCATGCAGTCCTGCACGATTGGCTACGGCACACCGACGGGAAGTTGAGCTTCCTGGG TTTCGTCAAGTTGTTGCATGGCGTGTCTAG
AA sequence Show only first row Show all	>Lus10009342 pacid=23148918 polypeptide=Lus10009342 locus=Lus10009342.g ID=Lus10009342.BGIv1.0 annot-version=v1.0 MGLCTSKPSSPDRSIHVSHQQSETGLSSAGADVPPDNGGGERRGQGGRSSSAGGPGGEGTAKHIRAVLARRHGSVKPNEASIPEGSEVDGMAALDKSFGF SKHFGNKYELGDEVGRGHFGYTCAAKFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHSNLVQFYDAYEDADNVYIVMELCEGGELLDK ILASPFLYSADERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSPEARDFVKRLLNKDPR KRLTASQALSHPWIKDSNDVKVPLDILVFKLMKAYMRSSSLRRAALRALSKTLTVDELFYLKEQFSLLEPNKNGTISLDNIKSALLKHATDAMKESRIPD FLASLNALQYRRMDFEEFCAAALSVHQLEAVDRWEQHARCAYELFEKDGNRAIMIEELASLIINRVLIVFAGTRPEPFCPGSCSPARLATAHRREVELPG FRQVVAWRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10009342 [exp]	0	1
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10038892 [exp]	3.5	0.8580
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10028301 [exp]	3.5	0.8841
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	6.8	0.8731
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	6.9	0.8706
AT5G57480			P-loop containing nucleoside t...		Lus10025479 [exp]	10.2	0.8203
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10030003 [exp]	11.0	0.8525
AT3G13980			unknown protein		Lus10008457 [exp]	12.5	0.7833
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019281 [exp]	12.6	0.8009
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	13.4	0.8415
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	17.1	0.8357

Compare expression of checked genes

Lus10009342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.