Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50590 1951 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002967 [exp] 2042 / 0 AT3G50590 1778 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G041000 [exp] 2143 / 0 AT3G50590 2389 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G136300 [exp] 839 / 0 AT3G50590 815 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10009343 pacid=23148897 polypeptide=Lus10009343 locus=Lus10009343.g ID=Lus10009343.BGIv1.0 annot-version=v1.0 ATGGAGTGGGCAACTGTGCAGCATCTGGATCTGCGGCATGTTGGCCGAGGTGTTAATCGGCGGTTGCAGCCTCATGCTGCTACGTTTCACCCTACTCAAG CTCTTGTAGCTGTGGCGATCGGTCCTTCCATAATTGAATTTGATGCTGTTACTGGTAGCAAACTCTCTACTATTAACATTGGGGCGCCTGTTGTTCGGAT GGGTTACAGCCCTACCAGTGGCCATTCTGTGATTGCTATTCTAGAGGATTGTACGATTCGGGCATGTGATTTCGACACTGAGCAAACTTGTGTGTTGCAT TCTCCTGAAAAGAGATCCGAGCATATAACTATTGATACAGAAGTTCATCTGGCTTTGACTCCACTTCAGCCTGTTGTATTTTTTGGTTTCAGCCGCAGAA TGAGTGTAACTGTTGTTGGAACCGTTGAAGGGGGGAGAGCACCAACAAAGATCAAAACGGACTTGAAGAAGCCAATAATGAATCTTGCATGCCATCCGCG GCTCCCTGTTTTGCTCGTTTTGCTTATCCCTCTCAGTATTCTAGCAGCTGACGATGTGTTCTATTACTTTTCTCAAACCCAGGTGGGCTCACAACCAATT ACATCAATATCTTGGCTCTCAATGTTGAAGCTACTTGTCACTGTTTCAAAAGATGGAACTCTTCATGTGTGGAAAACACGGTTGATTGTCAATCCTAATA GACCATTGATGCCAGCGAACTTTTTCGAGGCAGCTGGAATTGAGTCAATAGACATTCCTCGCATTTTGTCTCAGCAGGGAGGAGAAACAGTTTATCCTTT ACCAAGGATTAGAGCCTTAGAAGTTCACCCAAAATTGAATTTAGCAGCTCTTCTATTTGCAAATATGGCGGGTGGTGATAATATGAGGAACAGGGCTGCC TATACCAGGGAAGGAAGAAAACAACTTTTTGCAGTCCTTCAAAGTGCGAGGGGATCATCAGCTTCTGTTTTGAAGGAAAAACTGTCATCCCTTGGTGCAT CAGGAATTTTGGCTGAACATCAGCTCCAAGCAGAACTGCAAGAGCATCATCTGAAAGGGCATGGCCAGCCAACAATTTCAGACGTTGCAAGGAAGGCATT CCTTCACAGCCATTTTATGGAAGGCCATTCAAAAAGCACCCCAATATCACGACTGCCTCTGATTTCAATTTTAGATACCAAACATCATCTGAAGGACATA CCTGTTTGCCAGCCTTTTCATTTGGAGTTGAATTTCTTCAACAAAGAAAATCGAGTCCTTCATTATCCTGTGAGGGCTTTCTATGTGGAGGGTTTGAATC TTATGGCATACAATCTCTGCTCTGGAGGAGACAGCATATACAAAAAACTATATACATCGATTCCTGGGAATGTGGAATATCATCCAAAGCACGTGGTTTA CGGTAAAATACAGCGGTTATTCCTGGTTGTTTATGAATTTAGTGGTTCTACAACTGAAGTTGTACTTTATTGGGAGAATACTAGTTACCAGGCAGCAAAT AGTAAAGGAAGTACATTGAAAGGGCGAGATGCTGCATTTATTGGTCCTAAGGAGACCCAGTTTGCAGTTCTTGATGAGGACAAGACAGGACTATCGCTTT ATGTTTTGCCTGGAGGTGCTACAAAAGAAGGCAGTGATAAAGATTTATTGCTAGAAGAGAACCCTACTGCTGCTGAAGTAACAAAAGATGATGGGCCTCT TCAGGGTCCAATACAGTTTATGTTTGAAAGCGAAGTCGATCGTATATTCTCCACTCCTATAGAGTCTACTTTGATGTATGTGTCCAACGGGGATCAGATT AGTTTTGCCAAGTTGATTCTGGACTGTACCTTTAGTATTATGTATCAATTTCCTGTGCTTTGCATTAGCTCCTGTATTGTGAGACATGGGGTATTTGCTG GAACTCATGCTTTTGGAGAAAATATGGAAAACAGAGCGGTCACTGAAGAAGTTGATCTATTAATCATAGTGGATGAGAAGGTTTCCAGTGTCCCACGTGT CCACTGGCAAGAAACTCCACGAGGTTTTGTCGCAGGAATATTGACCACTCGCAGGAATTTGTTGGCTAGACTGATTTTTTATGTTGTCCTTAACTTGGCG CACTTTAGATCCCTTCTGTGGGTTGGTCCAGCTCTTCTATATTCCACCACTACTGCTGTCAGTTTGCTTGGATGGGATGGAACTGTAAGAACTATCCTTT CCATTAGCATGCCATATGCAGCTCTGGTGGGTGCATTGAACGATCGTTTGCTACTTGCTAACCCGACAGATATAAATCCCAGACAAAAGAAGGCGATCGA GATTAGGAGTTGTTTGGTTGGGCTTCTTGAGCCACTTCTAATAGGATTTTCCACAATGCAACAAACTTTCGAACAGAAGCTTGACCTTTCAGAAACACTG TACCAAATTACTTCAAGGTTTGATAGCTTGCGGATTACTCCTAGGGCACTTGAGATTCTTGCTAGGGGTCCTCCGGTTTGTGGAGATCTTGCAGTGTCGT TATCCCAAGCTGGTCCTCAGTTTACGCAGGTCTTGCGCTGTATCTATGCCATCAAAGCTCTTCGTTTTTCCACAGCGTTGTCTGTTCTTAAAGATGAGTT CTTGCGGTCAAGAGATTATCCGAAATGTCCTCCAACCTCTCATTTGTTCCACCGATTTCGACAGCTGGGATATGCTTGTATAAGGTACGCAATACTGGAT GTTAATGTAGTGCACCCAACAACACATGCATACAGATATGGTCAATTTGACAGTGCCAAAGAAACATTTGAAGTCATTGCAGACTATGAAAGCCTGCTCG ATTTGTTCATATGCCACCTCAACCCTAGCGCTATGCGCCGACTTGCTCAAAAACTGGAAGAAGAAAGTGTTGATCCAGAATTGAGGCGATACTGCGAAAG AATTTTAAGAGTTAGGTCTACTGGATGGACGCAAGGAATTTTCGCGAACTTCGCCGCTGAGAGCATGGTCCCGAAAGGTGCCGAATGGGGCGGTGCCAAC TGGGAAATGAAAAGTCCTACTAATTTGAAGAGCATTCCTCAGTGGGAGCTTGCCGGGGAGGTCATGCCATATATGAGGACCGACGAGGGAACAATCCCTG CCATTATCACAGATCATATTGGTGTTTATCTAGGTTCAATTAAAGGCAGAGGCAATGTCGTTGAAGTGAGAGAAGATAGCTTAGTCAAAGCTTATATCCC TTCAGGCGACAATAAGCAGAACGGAGCTCCAGATTCTCTACTTAAATCACTCTCCAGTAATTCCAAGGGAAAACCTGATAGCAATTCAAACGGTGGTTCA TTTACGAGTCTCGAAGCTCTTACAAGACAAACTACTGGTTCATCTGCTGAACAAGCCAAAGCAGAAGAGGAATTCAAGAAAACATTATACGGTGCAGCTG ATGATGGCAGCAGTAGTGATGAAGAAGGAATGTCAAAAACCAAAAAGCTACAAATCCGGATAAGAGAAAAGCCAATTTCATCAACAACTGTAGATGTCAA TAAAATCAAAGAAGCCACAAAACAGCTTAAACTCGGTGATGCATTAGGCCCTACCCCGAGGACAAGACCACTAAGTGGCTCTCAAGATTTCGGTCAGCTC TTGTTGCAGCCTCCATCTACTGTTAGTAGTGCCCCAGCTGCTGCAGTTGGAGTTTCGGCCCCTACTGATTTGTTTGGCTCCTTTATGCAACCCCCGCCAG TATCACAGCCAGCTCCGGCAGCTGGACCTGCAGCTCGGCCCATCCCAGAAGACTTCTTCGAACACACAATTTCATCCATTCAAGTTGCAAAGTCTCTTCC TCCTCCAGGTACCTATCTTTCAAAGATGGAGCAAACTTTCCAGGGAGCCGAAGGTGGCACCCCTGTAGCAACACCGAATCCAGCTGGCACCCCTGTGGCT GACATTGGCTTCCCCGGTGGTGGTGTTCCGCCACAGACCGCTCAACAAAATTTCCCAACTGATTCATTCGGACTACCTGATGGTGGTGTGCCGCCACAAG TCTCTACTCAGGCATCGTCCATGATGCCACAAGTCCCAGGCCAGGCTGCTTTCCCGCCTCAACCTAACATTGTTCAGCCTTCTCAGGCTCCAATGTCTTC ACAGCCTCTCGATCTGAGTGTCCTCGGAGTCGCGAATACTGATGAGCCTGGGAAATCTCCAGGACCTGCTCCACCATCATCTGTGCGCCCTGGACAGGTT CCTCGTGGGGCAGCTGCTTCTATGTGCTTCAAGATCGGCCTTGCCCACCTTGAGCAGAATCAGCTCCCTGATGCATTGTCATGTTTCGATGAAGCTTTCC TTGCACTGGCCAAAGATTTCTCTCGCGGGGCTGATATTAAAGCTCAAGCAACCATCTGTGCCCAGTACAAGATTGCGGTTACGCTGCTTCAGGAAATTAC AAGGTTGCAGAAGGTACAAGGACCAAATGTGCTCAGTGCAAAAGACGAAATTGGAAGGCTATCCCGACACCTGGGATCCTTACCTCTTCAAGCAAAGCAC CGAATAAACTGCATACGAACCGCAATCAAGCGTAACATGGAAGTCCAAAACTTCTCCTACGTGAAACAGATGCTGGATCTTCTCCTTTCCAAAGCTCCCC AAAGTAAGCAGGACGAGCTGAGAAGCCTCATCGACATGTGCGTCCAGAGGGGCTCTTCGAACAAGTCAATTGATCCTCAGGAAGACCCTTCCCAGTTCTG TGCCGCCACTCTTGGCCGACTTTCGACAATTGGATACGACGTCTGCGATGTATGTGGAGCCAAATTCTCAGCTCGCTCTTCTCCTGGCTGCATTATTTGC GGTATGGGCAGCATCAAAAGATCCGACGCAGTCGCTGGACCAATTTCCTCCCCGTTCAGCTGA
AA sequence Show only first row Show all	>Lus10009343 pacid=23148897 polypeptide=Lus10009343 locus=Lus10009343.g ID=Lus10009343.BGIv1.0 annot-version=v1.0 MEWATVQHLDLRHVGRGVNRRLQPHAATFHPTQALVAVAIGPSIIEFDAVTGSKLSTINIGAPVVRMGYSPTSGHSVIAILEDCTIRACDFDTEQTCVLH SPEKRSEHITIDTEVHLALTPLQPVVFFGFSRRMSVTVVGTVEGGRAPTKIKTDLKKPIMNLACHPRLPVLLVLLIPLSILAADDVFYYFSQTQVGSQPI TSISWLSMLKLLVTVSKDGTLHVWKTRLIVNPNRPLMPANFFEAAGIESIDIPRILSQQGGETVYPLPRIRALEVHPKLNLAALLFANMAGGDNMRNRAA YTREGRKQLFAVLQSARGSSASVLKEKLSSLGASGILAEHQLQAELQEHHLKGHGQPTISDVARKAFLHSHFMEGHSKSTPISRLPLISILDTKHHLKDI PVCQPFHLELNFFNKENRVLHYPVRAFYVEGLNLMAYNLCSGGDSIYKKLYTSIPGNVEYHPKHVVYGKIQRLFLVVYEFSGSTTEVVLYWENTSYQAAN SKGSTLKGRDAAFIGPKETQFAVLDEDKTGLSLYVLPGGATKEGSDKDLLLEENPTAAEVTKDDGPLQGPIQFMFESEVDRIFSTPIESTLMYVSNGDQI SFAKLILDCTFSIMYQFPVLCISSCIVRHGVFAGTHAFGENMENRAVTEEVDLLIIVDEKVSSVPRVHWQETPRGFVAGILTTRRNLLARLIFYVVLNLA HFRSLLWVGPALLYSTTTAVSLLGWDGTVRTILSISMPYAALVGALNDRLLLANPTDINPRQKKAIEIRSCLVGLLEPLLIGFSTMQQTFEQKLDLSETL YQITSRFDSLRITPRALEILARGPPVCGDLAVSLSQAGPQFTQVLRCIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSHLFHRFRQLGYACIRYAILD VNVVHPTTHAYRYGQFDSAKETFEVIADYESLLDLFICHLNPSAMRRLAQKLEEESVDPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGAEWGGAN WEMKSPTNLKSIPQWELAGEVMPYMRTDEGTIPAIITDHIGVYLGSIKGRGNVVEVREDSLVKAYIPSGDNKQNGAPDSLLKSLSSNSKGKPDSNSNGGS FTSLEALTRQTTGSSAEQAKAEEEFKKTLYGAADDGSSSDEEGMSKTKKLQIRIREKPISSTTVDVNKIKEATKQLKLGDALGPTPRTRPLSGSQDFGQL LLQPPSTVSSAPAAAVGVSAPTDLFGSFMQPPPVSQPAPAAGPAARPIPEDFFEHTISSIQVAKSLPPPGTYLSKMEQTFQGAEGGTPVATPNPAGTPVA DIGFPGGGVPPQTAQQNFPTDSFGLPDGGVPPQVSTQASSMMPQVPGQAAFPPQPNIVQPSQAPMSSQPLDLSVLGVANTDEPGKSPGPAPPSSVRPGQV PRGAAASMCFKIGLAHLEQNQLPDALSCFDEAFLALAKDFSRGADIKAQATICAQYKIAVTLLQEITRLQKVQGPNVLSAKDEIGRLSRHLGSLPLQAKH RINCIRTAIKRNMEVQNFSYVKQMLDLLLSKAPQSKQDELRSLIDMCVQRGSSNKSIDPQEDPSQFCAATLGRLSTIGYDVCDVCGAKFSARSSPGCIIC GMGSIKRSDAVAGPISSPFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	0	1
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	3.5	0.9156
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	3.5	0.9176
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	3.5	0.9291
AT2G27900			unknown protein		Lus10000865 [exp]	4.5	0.8955
AT1G48490			Protein kinase superfamily pro...		Lus10031906 [exp]	5.7	0.9095
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018744 [exp]	6.0	0.8966
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	7.7	0.8936
AT4G39050			Kinesin motor family protein (...		Lus10017969 [exp]	8.5	0.9058
AT2G07360			SH3 domain-containing protein ...		Lus10027588 [exp]	8.7	0.8901
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030640 [exp]	8.7	0.8586

Compare expression of checked genes

Lus10009343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.