Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66820 97 / 2e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002968 [exp] 2079 / 0 AT5G66820 140 / 8e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G041300 [exp] 891 / 0 AT5G66820 109 / 1e-24 unknown protein Potri.005G136600 [exp] 876 / 0 AT5G66820 116 / 1e-26 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF12371 [flax] [poplar] TMEM131_like Transmembrane protein 131-like
Representative CDS sequence Show only first row Show all	>Lus10009344 pacid=23148885 polypeptide=Lus10009344 locus=Lus10009344.g ID=Lus10009344.BGIv1.0 annot-version=v1.0 ATGTTGAATGGCAATGCAATTGAGAAAGCAGAGCATGTCGGGTGCGGTTCATTTGGGGATGATCGGATTGAAGGCGCTGTAGTTGATCATATGGATTCGG GGCTTGATTCTGGAAGTGCAATGGGAAGTGAGAATTCTGGATATGTTTGCACCAATGCTCATTCGTTCTGCTTTCTTTCAACGTTAACTGGTTATTTAAG GGAGGAAGATAAGGTTAGAGAAGTAGAACCGTCTAATTATCAGTCTGGCTGTCCATTGTCCTTAGAGTTGAATCAGTGCAGTAGTTTGGCGAGTAACAAG AGCTGGTTACCGGATGATGGCTCGTTTGAGTTTATGAATGGCAGGACCGTTTTCTGTTCGTTGAATTCCCGAAAAGGCATCCATGGAATATCATCCCTTA TCGATCAGAAAAATTCATCTTCCTCTGCTTCTTGTGGAGAATCTATGGATGGTTCTAAGTTTAGGCTAAACAAGCAGTTAGAGTTTACTGAGTCTATTCC TTCAGGTGTCGGTGCTTCGCCCCATGTAGAAGTAAGTCATTCTAGTCTAGATTGGGGTCGGAAGTATTTATATTCTCCTTCAGTAGTTTTCTTGACGGTG GCAAATACCTGCAATGACAGCGTTCTGCATGTTTATGAGCCATTCAGTACCAACATGCAGTTCTATCCCTGCAATTTTAGCGAAGTTTTGCTAGGACCTG GCGAGGTAGCTTCTTTCTGTTTCGTCTTCTTACCTAGATGGTTAGGCTTGTCCTCAGCTCACCTCATATTGCAGACAAGCTCTGGTGGTTTTGTGATCCA GGCCAAAGGTTATGGTGTGGAGTCCCCTTATGCCATCAGTCGTTTGACGAGCATTAACATTCCTTCCAGCGGAGAGTTGAGGAAGAATTTGTCTATATTT AATCCTTTCAATGAGACCATCGTGGTGAAGGAAGTAAGTGCATTGCTGTCAATTTCATCGGGGAACATTTCGCTTCAATCTGAAGCTACTTGTTCTTTAG GAAATTTCAAGTCTTCCAACAATCTTAGCCTGCTGAATGCCAAGGACTGGCTAACTGTTCAAAACGGACAAGCTGCTGGTTTTCCTCTGCTGTCATTGAG GCCTCATGAAAACTGGGAGGTTGCTCCCAACGAGAGAGGGGCAATTGTTGAGCTAGACTTCTCATTTGGATCAGAGGGAAGAGTTTTCGGCGCATTCTGT ATGCATATGCTGAGGCCTTCCCAGAACGAGTCTGAAGCAATTGTCATTCCTCTTGAAGCTGCTCGGAGTGGAGGCAGGGCTCATGATAATGTCTTCGATT TGATTTCAATTTCGCTCGAGGCTCTGCCCTGTTACGCCTGCAAGACTCCTGTGGTTGCCATTTCCCTTTTCAACAGAGCTCATTATATGCTGAATGTTGT GAAAATTAGTGAAGCGGGATCAAGAATTTTCCAGATCAAGTACTCTGAAGGCTTGCTTCTTTTTCCTGGAAGTTCGACACAAGTAGCTCTGGTTGGTCCC CCCCCCCCGCCATATGAGTTATGTGATTCAGAACTTGAGAATTGCAACTTAATTATTTTGACAAATGATTCCAGTACTCAGATTGAAGTCCCTGGCCAAG ATATCATCTACATCTGTTCCAGGCATCAGAAGGATTCATCCATTGGGTACCATAATGCTTTTGTTGGAGCAGATGATCACAATCAAGGATCAAGGTCATT CGAAGCTGGAATGCAAGGGTACAAGGAGTTAAAGTTACCCGAGACAGCAGAAGGAGATAAATTCGTTCTAGATAACTGGAAATCTCATATCACTGCAAGC GGAATCTCTGTTATTAGTGACCAGGAGATGATATTCCCTGTCGTAGAGGTCGGTGATCATTTCTCCCAGTGGATATCTGTGAAGAATCCCAGTGATCAAC CTGTTGTAGTGCAGCTCATTCTCAACTCGGCCGAAATTCTTGACAAATGCAAGACTCCGGCTGGTAGTATAGCGTCTCCTGCTGCTGGAAGCTTCACCCC GAATGGAATTGGTACCACTAGGTACGGATTCTCCTTGGCGAAAACAGCCGTCACAGAAGCTTATCTCCATCCCTATTCAGATCAAGCATTTCTAGGGCCA ATTGTATTTCACCCTTCAAATAGATGCACGTGGAGTAGTTCAGCGCTGATAAGAAACAATCTCTCTGGTGTGGAGTGGTTCTCTCTGCGAGGAGTTGGAG GTTCGCTCTCTTTGGAGACCATTGCAAACATGGAATTTCACCTCAACTTGCCTCTTCCTTTGAATACCACTTCATCGCATATGCTGTTTCAGATGGAAGA GACTTACCAAGCTTGTTGCAATCCATTAACAAAGGAGCTTTCTTTAAAGAACACCGGAGACTTGCCGTTGCATGTAAAAGACATTAAAGTTTCCGGAAAG GAATGTTCTTCGGACGGTTTTCTGGTTCATCCTTGTGCCGGTTTTACTCTGGATCCTGGAGAATCAACCAAACTAAAGGTATCTTACCAGACTGACTTAT CCGGAACATCTGTGCATCGAGATCTCGAACTAGCTTTAGTTGGTGGAAACTTTGTTATCCCTATGAAGGCTACACTTCCTGTTTATGCATTCAATCTCTG CAAGAAGTCTGTCTTCCTCGTGCGGTTGAAGAAGTTCTTCGTAGCAGTATTTTTCATCGCCTCTGCAGTGTCGGTGGTTCTATACTATGTGCAACACCAA GGGACAAAGTTTGGCTCTCGGGATGATGGCGTGTTGAAGGCGGAAAGAAGTGTAGAGAAATCCTCGAGAGTGCGTCGCAGTGACAAGAACATTAAGTTCT CTGCAGCCATTGATGTAGACCATTTGGGGTTAGTTGGGGAAAGCAAATCACTGAAGTGGGAATCTCTTGAAAGAAACTATGATGACGCTGCAGAGAATCG AGCAGTAGTTCAGAACATGAAACCAACTCGACATGGTATTGTTGAAGAGTCGGAACCAGACAAGCTTTTGGTCAATATAGGGAAAGAGAAAGGAAGAAGG AGAAGAAAGAGGAAGGGTGTTGCTGGTGGTATAGCAGGCCGGTTCGAAGTTTCGAGCAGTCAGAGTGGAAATTCTACACCGTCATCCCCTTTGTCTCCTG TCACATCCGTGATGCCAGACCGATTCTGGTCTCCGTCTTCTGGCCCGGAACTTGTCCAAGTCAAGAATCCATTCACTCAGTTGTCTGGCCGAGACAGTCA GAAGCCCCGAGCCATCGCATCGGAGCCGAAGCTTTCAGCCCAGTGCTCCAAGAACAATGGCTTCTCCGGCAATGAAGAGCGATCTCAGAGGAAATGTACA ACTAAACCTGCTGCTACTTCCCATTTCACCAGTAATCCTGTCTCGAATCTCCCTTGGTTTACCCCGGCCCCGATTCCAAAGCCCGCAATTGATCCTCACT TCCAAGCTCCTAGCTCTGTCCTTGCTCCTCATTTTCGAGCTCCTGGCACCAAGCATTATGAACAGAGCAATAGCAAGGCGGAGGCGGATCGATATGAGTA TGATATATGGGGGGATCACTTTCCGGGTCTGCGTTTGGTTGAGAGCTCGAAAGGCGCTAGGAGGAGTCCGAGTAGCTTAGCAATGGAGACGAGTCAGAGT AGCTTCTTTGTAAGGGGTCCTCAAACCCTGATGAAAAAGTCTCCTCTGCAGTCTGTAAGTTGCTTCCTACCAGACGGTTAA
AA sequence Show only first row Show all	>Lus10009344 pacid=23148885 polypeptide=Lus10009344 locus=Lus10009344.g ID=Lus10009344.BGIv1.0 annot-version=v1.0 MLNGNAIEKAEHVGCGSFGDDRIEGAVVDHMDSGLDSGSAMGSENSGYVCTNAHSFCFLSTLTGYLREEDKVREVEPSNYQSGCPLSLELNQCSSLASNK SWLPDDGSFEFMNGRTVFCSLNSRKGIHGISSLIDQKNSSSSASCGESMDGSKFRLNKQLEFTESIPSGVGASPHVEVSHSSLDWGRKYLYSPSVVFLTV ANTCNDSVLHVYEPFSTNMQFYPCNFSEVLLGPGEVASFCFVFLPRWLGLSSAHLILQTSSGGFVIQAKGYGVESPYAISRLTSINIPSSGELRKNLSIF NPFNETIVVKEVSALLSISSGNISLQSEATCSLGNFKSSNNLSLLNAKDWLTVQNGQAAGFPLLSLRPHENWEVAPNERGAIVELDFSFGSEGRVFGAFC MHMLRPSQNESEAIVIPLEAARSGGRAHDNVFDLISISLEALPCYACKTPVVAISLFNRAHYMLNVVKISEAGSRIFQIKYSEGLLLFPGSSTQVALVGP PPPPYELCDSELENCNLIILTNDSSTQIEVPGQDIIYICSRHQKDSSIGYHNAFVGADDHNQGSRSFEAGMQGYKELKLPETAEGDKFVLDNWKSHITAS GISVISDQEMIFPVVEVGDHFSQWISVKNPSDQPVVVQLILNSAEILDKCKTPAGSIASPAAGSFTPNGIGTTRYGFSLAKTAVTEAYLHPYSDQAFLGP IVFHPSNRCTWSSSALIRNNLSGVEWFSLRGVGGSLSLETIANMEFHLNLPLPLNTTSSHMLFQMEETYQACCNPLTKELSLKNTGDLPLHVKDIKVSGK ECSSDGFLVHPCAGFTLDPGESTKLKVSYQTDLSGTSVHRDLELALVGGNFVIPMKATLPVYAFNLCKKSVFLVRLKKFFVAVFFIASAVSVVLYYVQHQ GTKFGSRDDGVLKAERSVEKSSRVRRSDKNIKFSAAIDVDHLGLVGESKSLKWESLERNYDDAAENRAVVQNMKPTRHGIVEESEPDKLLVNIGKEKGRR RRKRKGVAGGIAGRFEVSSSQSGNSTPSSPLSPVTSVMPDRFWSPSSGPELVQVKNPFTQLSGRDSQKPRAIASEPKLSAQCSKNNGFSGNEERSQRKCT TKPAATSHFTSNPVSNLPWFTPAPIPKPAIDPHFQAPSSVLAPHFRAPGTKHYEQSNSKAEADRYEYDIWGDHFPGLRLVESSKGARRSPSSLAMETSQS SFFVRGPQTLMKKSPLQSVSCFLPDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66820			unknown protein		Lus10009344 [exp]	0	1
AT5G66820			unknown protein		Lus10002968 [exp]	1.0	0.8980
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10020775 [exp]	2.4	0.8677
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10009558 [exp]	2.4	0.8537
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	3.9	0.8640
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10004521 [exp]	5.9	0.7806
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10030005 [exp]	7.4	0.8581
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	9.2	0.8633
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	14.2	0.8338
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	15.5	0.8299
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007931 [exp]	16.7	0.8183

Compare expression of checked genes

Lus10009344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.