Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50610 97 / 6e-24 unknown protein AT5G66816 54 / 3e-09 unknown protein AT5G66815 39 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002970 [exp] 381 / 2e-134 AT3G50610 98 / 2e-24 unknown protein Lus10009345 [exp] 40 / 0.0002 AT2G23440 42 / 1e-06 unknown protein Lus10002969 [exp] 39 / 0.0003 AT2G23440 44 / 7e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G136700 [exp] 84 / 3e-18 AT3G50610 78 / 1e-16 unknown protein Potri.007G041601 [exp] 82 / 3e-17 AT3G50610 74 / 9e-15 unknown protein Potri.007G041400 [exp] 44 / 7e-06 AT2G23440 45 / 2e-07 unknown protein Potri.007G042000 [exp] 39 / 0.0005 AT5G66816 43 / 2e-06 unknown protein Potri.014G034500 [exp] 38 / 0.0008 AT5G66815 43 / 1e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009346 pacid=23148899 polypeptide=Lus10009346 locus=Lus10009346.g ID=Lus10009346.BGIv1.0 annot-version=v1.0 ATGAGGACTACTTTTTACCAATGTGCCATTCTTTTCTCACTACTTGCCTTCCACAAAATCCTCATCCCCACCCAAGCCAGACCACTCAGAAACTCGCCTC CAGCCGCCCTACTCTCCGACAACAACACTCCATCTTCCGACGATGCGGGATCCAAGGAAGACTTCCGCCCCACCGCCCCCGGTGTAAGCCCTGGAGTCGG ACATCCCGAAGAAGGTTTTCGTCCGACGGCGCCAGGGTTTAGCCCCGGGGTGGGCCATCGCATGTTGGACAATGGAGTTGTCGCTATTACTGATAGTGAC GACTTTAGGCCGACAGAGCCCGGATACAGCCCAGGGGTGGGCCACTCCGTGCCGACTAGCACAGAGGTTGAGTCGTCGACGACGAATGCCAGTAGCGATG ATTTTAGGCCGACAGCTCCTGGCTTCAGCCCCGGGGTGGGGCATTCCGTGCCGAATGATGTAGCTAATGTTTCGGAGCAAGAGAAGAGCAACAGTCATTA TTGGGTTTCAGGACAGGCTGAGGGTTTCAGGCCAACTCAGCCTGGACATAGCCCCGGAGCAGGGCATCCTTCACCGACGACAGAGGTGGTGGCGGTAGTG CATATTAATGAGGATGGTGATAAGAACGATTTTAGGCCAACTCAACCTGGACATAGCCCTGGAGCTGGACATCGTCCTTTGACGACGACAAAGGTAACTA ACGAAGATAGTGACAATGGTACTCAGAATGATTTTAGGCCAACTCAGCCAGGACATAGCCCTGGAGCTGGACATCATCCTTTGACAGCGACAGAGGCGAC GATTGCCGATATTAATGATGATGGCGACAACAACACCCCATCGACGAAAAATGATTTTAGGCCAACTCAGCCTGGACACAGCCCTGGGGCGGGACATAAG AACTAG
AA sequence Show only first row Show all	>Lus10009346 pacid=23148899 polypeptide=Lus10009346 locus=Lus10009346.g ID=Lus10009346.BGIv1.0 annot-version=v1.0 MRTTFYQCAILFSLLAFHKILIPTQARPLRNSPPAALLSDNNTPSSDDAGSKEDFRPTAPGVSPGVGHPEEGFRPTAPGFSPGVGHRMLDNGVVAITDSD DFRPTEPGYSPGVGHSVPTSTEVESSTTNASSDDFRPTAPGFSPGVGHSVPNDVANVSEQEKSNSHYWVSGQAEGFRPTQPGHSPGAGHPSPTTEVVAVV HINEDGDKNDFRPTQPGHSPGAGHRPLTTTKVTNEDSDNGTQNDFRPTQPGHSPGAGHHPLTATEATIADINDDGDNNTPSTKNDFRPTQPGHSPGAGHK N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50610			unknown protein		Lus10009346 [exp]	0	1
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016120 [exp]	2.4	0.8630
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Lus10034357 [exp]	5.3	0.8311
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10000973 [exp]	7.9	0.8815
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012817 [exp]	8.5	0.8843
					Lus10017936 [exp]	9.0	0.8322
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021135 [exp]	9.6	0.8917
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10023007 [exp]	15.4	0.7933
AT5G03310			SAUR-like auxin-responsive pro...		Lus10037990 [exp]	28.8	0.8160
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10039153 [exp]	34.6	0.8698
AT5G46490			Disease resistance protein (TI...		Lus10042465 [exp]	34.8	0.7975

Compare expression of checked genes

Lus10009346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.