Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50620 454 / 1e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G34420 439 / 8e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G15730 434 / 2e-153 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002971 [exp] 644 / 0 AT3G50620 451 / 2e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027910 [exp] 404 / 1e-141 AT2G15730 507 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012072 [exp] 400 / 3e-140 AT2G15730 510 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042667 [exp] 378 / 9e-132 AT2G15730 405 / 4e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021749 [exp] 377 / 2e-131 AT2G15730 402 / 2e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G042100 [exp] 511 / 0 AT3G50620 509 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G136900 [exp] 494 / 2e-177 AT3G50620 532 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G034300 [exp] 438 / 3e-155 AT2G15730 491 / 7e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G105200 [exp] 438 / 4e-155 AT2G15730 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G143300 [exp] 424 / 1e-149 AT2G15730 563 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10009348 pacid=23148906 polypeptide=Lus10009348 locus=Lus10009348.g ID=Lus10009348.BGIv1.0 annot-version=v1.0 ATGTTATTGAGGATGGTGGTTCTAATGTTTGCCATGGCCTTTGGTGTGTACATCTGCACGATTTGCCTACACCAAATAACCACCCGCAGCAAAGTGAAGA TACAAGACATACAAGTGATCGAGAGGCCATCCTCTGGCGGTGGTGATGATGATCTGTTTCAAGTGCCTAAGCTGCATTACCCGAATCCGGAAACTTTCAG CAGGGATGAATGTGTCGATAATCCTGTACGATACTTTGCGATTGTGTCGACTCAAAGATCAGGGAGTGGATGGTTTGAGACCTTGTTGAACAGTCATGTT AATGTGAGTTCGAATGGGGAGATCTTCTCCGTTCTGGATAGGAGAAGAAACGTCTCGGCCATCGTTCAGACTCTGGATAAGGTTTATAATCTGGACTGGT TCTCCAGCGCTTCGAAGAATGAATGCTCTGGTGCTGTTGGATTCAAGTGGATGCTTAATCAGGGATTGATGGAGCACCACGAAGAGATAGCGGAGTATCT CAACCGCAGGGGAGTGTCCATAGTATTTATGTTCCGAAGAAACCTACTGCGAAGAATGGTGTCCCTCCTCGCAAACTCTTACGACAAGTACGCAAAGCTA CTCAACGGAACCCACAAGTCTCATGTTCATACTGCGGAAGAGGCTGAAATGCTATCCAAGTATAAGCCCACGGTTAACTCCACATTGCTCATATCCGATC TAAGGAAAGCAGATGACATGGTCACCGCGACCCTCAAACACTACAACACGACACGGCACATTGTTGTCTACTACGAGGATCTCGTCAAAGACAACAAGAA ACTGGAGGAAGTGCAGGAGTTCCTGAGGCTACCGGTGAGGAAACTGAGAAGCCGGCAGGTGAAGATCCACCAGGGATTGTTATCGGAGCTGATCGAGAAC TGGGAAGATGTGAACAAGACGCTGAACGGAACAGAATTCGAGGATTTCCTCCAAGCCGACTATTGA
AA sequence Show only first row Show all	>Lus10009348 pacid=23148906 polypeptide=Lus10009348 locus=Lus10009348.g ID=Lus10009348.BGIv1.0 annot-version=v1.0 MLLRMVVLMFAMAFGVYICTICLHQITTRSKVKIQDIQVIERPSSGGGDDDLFQVPKLHYPNPETFSRDECVDNPVRYFAIVSTQRSGSGWFETLLNSHV NVSSNGEIFSVLDRRRNVSAIVQTLDKVYNLDWFSSASKNECSGAVGFKWMLNQGLMEHHEEIAEYLNRRGVSIVFMFRRNLLRRMVSLLANSYDKYAKL LNGTHKSHVHTAEEAEMLSKYKPTVNSTLLISDLRKADDMVTATLKHYNTTRHIVVYYEDLVKDNKKLEEVQEFLRLPVRKLRSRQVKIHQGLLSELIEN WEDVNKTLNGTEFEDFLQADY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50620			P-loop containing nucleoside t...		Lus10009348 [exp]	0	1
AT5G03500			Mediator complex, subunit Med7...		Lus10016217 [exp]	9.7	0.8169
AT3G60670			PLATZ transcription factor fam...		Lus10009283 [exp]	12.8	0.8861
AT1G50660			unknown protein		Lus10043111 [exp]	14.1	0.8479
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10012513 [exp]	14.4	0.8702
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	17.7	0.8751
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10040096 [exp]	20.7	0.8035
AT5G40030			Protein kinase superfamily pro...		Lus10014501 [exp]	20.8	0.8831
AT1G04150			C2 calcium/lipid-binding plant...		Lus10011271 [exp]	21.6	0.8764
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	22.8	0.8768
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10002538 [exp]	27.1	0.8553

Compare expression of checked genes

Lus10009348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.