Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66800 101 / 2e-27 unknown protein AT4G34419 71 / 5e-16 unknown protein AT3G50640 69 / 4e-15 unknown protein AT3G19200 50 / 3e-08 unknown protein AT5G19340 45 / 5e-06 unknown protein AT3G05980 44 / 2e-05 unknown protein AT5G38320 42 / 7e-05 unknown protein AT1G67050 40 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019352 [exp] 209 / 6e-70 AT5G66800 85 / 3e-21 unknown protein Lus10019867 [exp] 71 / 8e-16 AT3G19200 89 / 3e-23 unknown protein Lus10014046 [exp] 69 / 7e-15 AT3G19200 89 / 8e-23 unknown protein Lus10031218 [exp] 40 / 0.0003 AT1G79060 253 / 7e-80 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G042600 [exp] 158 / 7e-50 AT5G66800 121 / 4e-35 unknown protein Potri.004G141600 [exp] 102 / 9e-28 AT4G34419 95 / 2e-25 unknown protein Potri.009G102800 [exp] 96 / 2e-25 AT4G34419 95 / 2e-25 unknown protein Potri.010G090700 [exp] 43 / 3e-05 AT3G05980 141 / 2e-41 unknown protein Potri.008G150300 [exp] 43 / 4e-05 AT3G05980 154 / 3e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009349 pacid=23148868 polypeptide=Lus10009349 locus=Lus10009349.g ID=Lus10009349.BGIv1.0 annot-version=v1.0 ATGGCATGCTTAGACATGTACAACTCCGATCAGCAGCAGCACAAAGGCAGCCACCACCATCACCACCCTCCTCCCATGAGCCCCAGAATCTCCTTCTCTA ATGACTTTGCTGATTCCCACCACCAGATGATGATGATGAAGCAAGAACGAAGCAGCAGCTCCTCTTCATCGTCAAAGCAGCATCCGCCAGCTTCGTCATC AGACTTCGAATTCTCAGTTACAGGCTATTCCATGATGAGTGCTGATGAGCTCTTCTCCAAAGGCAGGATCTTGCCGTTCAAGGACACCAGCAGCAGCCAA ATGCAGAGGACTACTACTATAAGGGAGGAACTTCTTGTTGATGAAGACAGTGAAGTTTCACTGAGGCCGCCAAGAGGCTCGGCGGGGAGGTGGAAAGGGT TTCTGGGATTGAGGAGGAGCCACATTGGGTCGAAGAAAGTTGAGGATAGAAGGGGGTCTGGTAATTTTGTTCAAGAACGGAGTCAGGTGCAGGGGTGTGG AAATGGGGATATGGAGAAGTGA
AA sequence Show only first row Show all	>Lus10009349 pacid=23148868 polypeptide=Lus10009349 locus=Lus10009349.g ID=Lus10009349.BGIv1.0 annot-version=v1.0 MACLDMYNSDQQQHKGSHHHHHPPPMSPRISFSNDFADSHHQMMMMKQERSSSSSSSSKQHPPASSSDFEFSVTGYSMMSADELFSKGRILPFKDTSSSQ MQRTTTIREELLVDEDSEVSLRPPRGSAGRWKGFLGLRRSHIGSKKVEDRRGSGNFVQERSQVQGCGNGDMEK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66800			unknown protein		Lus10009349 [exp]	0	1
AT5G66800			unknown protein		Lus10019352 [exp]	1.0	0.9362
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Lus10019496 [exp]	5.3	0.8400
AT5G27220			Frigida-like protein (.1)		Lus10033831 [exp]	5.7	0.8283
AT4G30850		HHP2	heptahelical transmembrane pr...		Lus10036605 [exp]	9.3	0.7638
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030657 [exp]	16.2	0.8458
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008497 [exp]	18.3	0.8200
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	22.8	0.8374
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10016156 [exp]	24.1	0.8229
AT5G49170			unknown protein		Lus10022872 [exp]	24.5	0.8184
AT4G17240			unknown protein		Lus10038797 [exp]	26.0	0.8434

Compare expression of checked genes

Lus10009349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.